Browse Element(s) Details


OsAffx.13654.1.S1_at

Description tigr:9632.m00313
TID=OsAffx.13654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0405011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04000Os.56163.1.S1_at11/114+1830142..1835393YT521-B-like family protein, expressed
LOC_Os04g04010Os.26873.1.A1_at11/114+1835885..1838730expressed protein
LOC_Os04g04020Os.8704.1.S2_at11/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04020Os.8704.1.S1_at10/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04030Os.52951.1.S1_at2/114+1853455..1856772hypothetical protein
LOC_Os04g04040OsAffx.13653.1.S1_at11/114+1858765..1859492hypothetical protein
LOC_Os04g04050OsAffx.13654.1.S1_at11/114+1859867..1860193hypothetical protein
LOC_Os04g04060OsAffx.13655.1.S1_at11/114+1861757..1863880Dynamin central region family protein, expressed
LOC_Os04g04070OsAffx.26978.1.S1_at2/114+1865197..1867015hypothetical protein
LOC_Os04g04080NANA4+1870083..1871854transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g04090OsAffx.265.1.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04090Os.46314.3.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04100OsAffx.31133.2.S1_at11/114+1880497..1882041hypothetical protein
LOC_Os04g04100OsAffx.27757.1.S1_at1/114+1880497..1882041hypothetical protein
LOC_Os04g04109NANA4+1882420..1882648NA
LOC_Os04g04120NANA4+1883826..1890866retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13654.1.S1_at--108--9311Chr04:1860135..1860159 (25 bp)
TCCCCAATGTCATGCTGAGGTCGGT
LOC_Os04g04050
OsAffx.13654.1.S1_at--1141--9611Chr04:1860126..1860150 (25 bp)
TCATGCTGAGGTCGGTGCTCCACAA
LOC_Os04g04050
OsAffx.13654.1.S1_at--105--7311Chr04:1860112..1860136 (25 bp)
GTGCTCCACAATCTACTAAACCAGA
LOC_Os04g04050
OsAffx.13654.1.S1_at--787--2011Chr04:1860098..1860122 (25 bp)
ACTAAACCAGAAGATCGAGAGCATT
LOC_Os04g04050
OsAffx.13654.1.S1_at--763--2171Chr04:1860071..1860095 (25 bp)
ACACGTCCCGCACGATCTTGTCAGG
LOC_Os04g04050
OsAffx.13654.1.S1_at--1066--2891Chr04:1860013..1860037 (25 bp)
AAGGTGCTGCAACACCACTCGTGGA
LOC_Os04g04050
OsAffx.13654.1.S1_at--1118--7331Chr04:1859953..1859977 (25 bp)
GTGCAGAGCCTCAATGTCATGGACA
LOC_Os04g04050
OsAffx.13654.1.S1_at--138--8731Chr04:1859939..1859963 (25 bp)
TGTCATGGACAAGGCGTTCACGGGA
LOC_Os04g04050
OsAffx.13654.1.S1_at--742--6751Chr04:1859924..1859948 (25 bp)
GTTCACGGGAACGATCGGCGCAGCA
LOC_Os04g04050
OsAffx.13654.1.S1_at--123--2591Chr04:1859915..1859939 (25 bp)
AACGATCGGCGCAGCACGTGTACGA
LOC_Os04g04050
OsAffx.13654.1.S1_at--780--1491Chr04:1859903..1859927 (25 bp)
AGCACGTGTACGAGCCATTGGATTA
LOC_Os04g04050
Target Sequence 
TCCCCAATGTCATGCTGAGGTCGGTGCTCCACAATCTACTAAACCAGAAGATCGAGAGCATTGCACACGTCCCGCACGAT
CTTGTCAGGCAGGTGTGGGACTATGTAGAGGACCTGGTGGTGAAGGTGCTGCAACACCACTCGTGGAGCTACCCGCAGGT
GCAGCTGTCGTGTCGCCGCGCCGTGCAGAGCCTCAATGTCATGGACAAGGCGTTCACGGGAACGATCGGCGCAGCACGTG
TACGAGCCATTGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis