Browse Element(s) Details


OsAffx.13668.1.S1_x_at

Description tigr:9632.m00379
TID=OsAffx.13668.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0469011/11Legume lectins beta domain containing protein
LOC_Os04g0338010/11Legume lectins beta domain containing protein
LOC_Os04g047701/11Legume lectins beta domain containing protein
LOC_Os04g035791/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04640OsAffx.3720.1.S1_at8/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04640OsAffx.4841.1.S1_at1/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04650OsAffx.3721.1.S1_at10/114+2223703..2224588hypothetical protein
LOC_Os04g04660OsAffx.13666.1.S1_at10/114+2230570..2232034hypothetical protein
LOC_Os04g04670OsAffx.25863.1.S1_at1/114+2234045..2239385Protein kinase domain containing protein
LOC_Os04g04680OsAffx.13667.1.S1_at11/114+2240746..2241648hypothetical protein
LOC_Os04g04690OsAffx.13668.1.S1_x_at11/114+2243068..2243771Legume lectins beta domain containing protein
LOC_Os04g04700NANA4+2245801..2247497retrotransposon protein, putative, unclassified
LOC_Os04g04710NANA4+2247699..2250509retrotransposon protein, putative, unclassified
LOC_Os04g04720NANA4+2254019..2259642retrotransposon protein, putative, unclassified
LOC_Os04g04730NANA4+2260562..2263176retrotransposon protein, putative, unclassified
LOC_Os04g04740OsAffx.3722.1.S1_at11/114+2266333..2266704hypothetical protein
LOC_Os04g04740OsAffx.3722.1.S1_x_at11/114+2266333..2266704hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13668.1.S1_x_at--922--9034Chr04:2279304..2279324 (21 bp)
TGCAGTGTCCTTCAGCTTCAACTTC
LOC_Os04g04770
OsAffx.13668.1.S1_x_at--609--10512Chr04:2243615..2243639 (25 bp)
TTCAGCTTCAACTTCTCCAACATAT
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--1146--1512Chr04:2243612..2243636 (25 bp)
AGCTTCAACTTCTCCAACATATCCG
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--1099--5832Chr04:2243570..2243594 (25 bp)
GACCTCAGATTCCAGGGCGACGCGA
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--618--1752Chr04:2243569..2243593 (25 bp)
ACCTCAGATTCCAGGGCGACGCGAC
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--158--8012Chr04:2243408..2243432 (25 bp)
GGATGGCTTTCTTCCTTGCCTATTA
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--122--8292Chr04:2243404..2243428 (25 bp)
GGCTTTCTTCCTTGCCTATTACCCA
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--687--10312Chr04:2243401..2243425 (25 bp)
TTTCTTCCTTGCCTATTACCCATCG
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--1106--4292Chr04:2243132..2243156 (25 bp)
CCTACATCTCCTTCAACAGCAGCAC
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--528--1932Chr04:2243107..2243131 (25 bp)
ACGGATGCTGGTCGCCTCCCTGTGT
LOC_Os04g04690
OsAffx.13668.1.S1_x_at--738--7791Chr04:2243098..2243122 (25 bp)
GGTCGCCTCCCTGTGTGGTTCCATG
LOC_Os04g04690
Target Sequence 
TGCAGTGTCCTTCAGCTTCAACTTCTCCAACATATCCGCCGCCAGACTCGAAGCNGACCTCAGATTCCAGGGCGACGCGA
CCTCNNCNCNGGCAAATGGGNNGGTGNNNANCNNCTNNACCANCTNCNCCNTNGNNNNNGTNNCCNNNNNCGGNNGTNNC
NGNGNNGANGGGATGGCTTTCTTCCTTGCCTATTACCCATCGNCTGAGCCGCCAANAGACTCAAATGGNNNCNACNTCGG
CCTCANCNCTGNANAAGGANTNNCNCGNGCCNAGACCANNNNAGCCACCGGCAAAGACCGNTTNNTCGCCGTCGAGTTCG
NCNNNACGTNCANNNNCNNANANGATNCNAGCNACGACCNNATCNGCATCGNCATCANNNCTGTTAGGGAGNCTAACTAC
NCAANAGTCTTGCCCNGCAACACGANACTGGAGGGGANCATGACANCCTACATCTCCTTCAACAGCAGCACNNNNACGGA
TGCTGGTCGCCTCCCTGTGTGGTTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13668.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis