Browse Element(s) Details


OsAffx.13673.1.S1_x_at

Description tigr:9632.m00409
TID=OsAffx.13673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ornithine decarboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0498011/11Pyridoxal-dependent decarboxylase, C-terminal sheet domain containing protein
LOC_Os09g371201/11Ornithine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04950OsAffx.3724.1.S1_at11/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950OsAffx.16132.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950Os.49637.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04959NANA4+2391271..2391731NA
LOC_Os04g04970OsAffx.3725.1.S1_at9/114+2395160..2396190hypothetical protein
LOC_Os04g04980OsAffx.13673.1.S1_x_at11/114+2400936..2402175Pyridoxal-dependent decarboxylase, C-terminal sheet domain containing protein
LOC_Os04g04990NANA4+2403567..2407056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04999NANA4+2410429..2410965hypothetical protein
LOC_Os04g05010Os.8922.1.S1_at10/114+2413872..2416640CBS domain containing protein, expressed
LOC_Os04g05020Os.40360.1.S1_at9/114+2422672..2424647hypothetical protein
LOC_Os04g05020Os.40360.1.S1_x_at7/114+2422672..2424647hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009089biological_processlysine biosynthesis via diaminopimelate
GO:0008836molecular_functiondiaminopimelate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13673.1.S1_x_at--107--7071Chr04:2401353..2401377 (25 bp)
GTCAACGTCACCACGTACGATTCCG
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--325--2571Chr04:2401356..2401380 (25 bp)
AACGTCACCACGTACGATTCCGAGG
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--904--7091Chr04:2401359..2401383 (25 bp)
GTCACCACGTACGATTCCGAGGAGG
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--903--2891Chr04:2401392..2401416 (25 bp)
AAGGTGAAGCGCTGCCACCCCAGTT
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--783--9711Chr04:2401910..2401934 (25 bp)
TCAACTGCATCCTCCTGGACAGCTA
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--994--1971Chr04:2401913..2401937 (25 bp)
ACTGCATCCTCCTGGACAGCTACGT
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--906--8791Chr04:2401997..2402021 (25 bp)
TGTTCGGGCCGACGTGCGACTCCAT
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--1102--1712Chr04:2402042..2402066 (25 bp)
ACCAGCTGCCGGAGATGAGCGTCGA
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--717--1591Chr04:2402059..2402083 (25 bp)
AGCGTCGACGACTGGCTTGTGTTCG
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--9--1971Chr04:2402104..2402128 (25 bp)
ACTGCGGCCGGCTCCAGCTTCAACG
LOC_Os04g04980
OsAffx.13673.1.S1_x_at--1099--1531Chr04:2402119..2402143 (25 bp)
AGCTTCAACGGCTTTGCCACGTCAG
LOC_Os04g04980
Target Sequence 
GTCAACGTCACCACGTACGATTCCGAGGAGGAGGTGGCCAAGGTGAAGCGCTGCCACCCCAGTTGCGAGCTGCTGCTCCG
CATCAAGGCGCCGGACTGCGGCGGCGTCAAGCCCGGCCGGTACTTCGCCGAGACCGCCTTCACGCTCGCCGCGCGCGTCA
TCGGGAAGCGCAGGCGCGGCGACGTGCGCGAGTACTGGATCGACGACGGCGTCTACGGCTCGCTCAACTGCATCCTCCTG
GACAGCTACGTGCCGCGCCCGAGGCCGCTCGCCGGCGCGCGCCCCGGCGAGGAGACGCACGCCTCGACGGTGTTCGGGCC
GACGTGCGACTCCATCGACACGGTGGTGACCGGGTACCAGCTGCCGGAGATGAGCGTCGACGACTGGCTTGTGTTCGACG
ACATGGGCGCCTACACCACTGCGGCCGGCTCCAGCTTCAACGGCTTTGCCACGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13673.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis