Browse Element(s) Details


OsAffx.13709.1.S1_at

Description tigr:9632.m00653
TID=OsAffx.13709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0741011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07370NANA4+3908842..3914738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07380OsAffx.22896.1.S1_x_at1/114+3916016..3918756retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07390OsAffx.13708.1.S1_at11/114+3925035..3925625hypothetical protein
LOC_Os04g07400OsAffx.25908.1.S1_at11/114+3926233..3927261hypothetical protein
LOC_Os04g07410OsAffx.13709.1.S1_at11/114+3930255..3931004retrotransposon protein, putative, unclassified
LOC_Os04g07410Os.38764.1.S1_x_at6/114+3930255..3931004retrotransposon protein, putative, unclassified
LOC_Os04g07410Os.54151.1.S1_x_at4/114+3930255..3931004retrotransposon protein, putative, unclassified
LOC_Os04g07410Os.45173.1.S1_x_at1/114+3930255..3931004retrotransposon protein, putative, unclassified
LOC_Os04g07420NANA4+3932552..3933130retrotransposon protein, putative, unclassified
LOC_Os04g07430OsAffx.13710.1.S1_at11/114+3936741..3937370hypothetical protein
LOC_Os04g07440OsAffx.30405.1.S1_x_at1/114+3938153..3939312hypothetical protein
LOC_Os04g07450OsAffx.29433.1.S1_at1/114+3943955..3944542retrotransposon protein, putative, unclassified
LOC_Os04g07460OsAffx.13711.1.S1_at11/114+3946389..3946795hypothetical protein
LOC_Os04g07460Os.24942.4.A1_x_at1/114+3946389..3946795hypothetical protein
LOC_Os04g07470NANA4+3954573..3958217retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13709.1.S1_at--376--7011Chr04:3930702..3930726 (25 bp)
GTAACAACCGTCCACCCAATGAAGG
LOC_Os04g07410
OsAffx.13709.1.S1_at--134--3011Chr04:3930719..3930743 (25 bp)
AATGAAGGATCAAGCCAGAGGCGTC
LOC_Os04g07410
OsAffx.13709.1.S1_at--1119--4411Chr04:3930732..3930756 (25 bp)
GCCAGAGGCGTCAACTTCGACAAAG
LOC_Os04g07410
OsAffx.13709.1.S1_at--901--5611Chr04:3930750..3930774 (25 bp)
GACAAAGGCGAAGGCACACGGCGAA
LOC_Os04g07410
OsAffx.13709.1.S1_at--623--2811Chr04:3930800..3930824 (25 bp)
AAGATCAAGGGCCTGGCTCCGAGCT
LOC_Os04g07410
OsAffx.13709.1.S1_at--453--8491Chr04:3930813..3930837 (25 bp)
TGGCTCCGAGCTTCGCAGTTCGAAA
LOC_Os04g07410
OsAffx.13709.1.S1_at--1--4111Chr04:3930826..3930850 (25 bp)
CGCAGTTCGAAAGACCACATGGGCA
LOC_Os04g07410
OsAffx.13709.1.S1_at--653--851Chr04:3930859..3930883 (25 bp)
ATGGCGAAGGGCATTTAGCGAAGCA
LOC_Os04g07410
OsAffx.13709.1.S1_at--1072--10331Chr04:3930872..3930896 (25 bp)
TTTAGCGAAGCATATGGACATCACC
LOC_Os04g07410
OsAffx.13709.1.S1_at--1112--251Chr04:3930883..3930907 (25 bp)
ATATGGACATCACCCAAGACGGGCC
LOC_Os04g07410
OsAffx.13709.1.S1_at--559--5951Chr04:3930915..3930939 (25 bp)
GAGAAGGCCCAATGGGCCACTATGC
LOC_Os04g07410
Target Sequence 
GTAACAACCGTCCACCCAATGAAGGATCAAGCCAGAGGCGTCAACTTCGACAAAGGCGAAGGCACACGGCGAAGGCTATG
CGGCGAAGCATGTGGGCGAAGATCAAGGGCCTGGCTCCGAGCTTCGCAGTTCGAAAGACCACATGGGCAAAGGGTATATG
GCGAAGGGCATTTAGCGAAGCATATGGACATCACCCAAGACGGGCCCTGGGCGGAGAAGGCCCAATGGGCCACTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis