Browse Element(s) Details


OsAffx.13774.1.S1_at

Description tigr:9632.m01038
TID=OsAffx.13774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g116309/11hypothetical protein
LOC_Os01g259101/11hypothetical protein
LOC_Os01g292901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g259901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g204301/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11590OsAffx.940.1.S1_x_at1/114+6326563..6328265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11600Os.17546.2.S1_x_at1/114+6330588..6332232transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11610NANA4+6332806..6335591hypothetical protein
LOC_Os04g11620Os.1709.1.S1_x_at7/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.17546.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.31497.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620OsAffx.10148.1.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11630OsAffx.13774.1.S1_at9/114+6352612..6356438hypothetical protein
LOC_Os04g11630Os.27004.1.A1_at1/114+6352612..6356438hypothetical protein
LOC_Os04g11640OsAffx.25982.4.S1_at11/114+6358768..6362321Methyl-CpG binding domain containing protein
LOC_Os04g11660Os.54805.2.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11660Os.54805.1.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11670OsAffx.13777.1.S1_at11/114+6381228..6382217hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13774.1.S1_at--236--7611Chr04:6353095..6353119 (25 bp)
GGGCAAGATTGAGTTTCCAAAGGTT
LOC_Os04g11630
OsAffx.13774.1.S1_at--862--2591Chr04:6353131..6353155 (25 bp)
AACCGACAAGGAACCTGGCAATGGT
LOC_Os04g11630
OsAffx.13774.1.S1_at--68--12743Chr12:6777385..6777406 (22 bp)
AGATATTCATACTAAGTGCTCTAGT
NONE
OsAffx.13774.1.S1_at--509--2931NONE
AAGGAAGTTCCTGCGCAAAAGAAGA
NONE
OsAffx.13774.1.S1_at--266--2771Chr04:6354827..6354851 (25 bp)
AAGACCCAGAGATCGGCTTGGCTAA
LOC_Os04g11630
OsAffx.13774.1.S1_at--53--8171NONE
GGAACACACCCAAGTACACAAAATG
NONE
OsAffx.13774.1.S1_at--641--4992Chr04:6365185..6365209 (25 bp)
GCATGTTCAGTGCAATTCTAGAATA
NONE
OsAffx.13774.1.S1_at--713--5212Chr04:6365205..6365229 (25 bp)
GAATATAGTGTTGTGACCGCACCAT
NONE
OsAffx.13774.1.S1_at--1011--4112Chr04:6365222..6365246 (25 bp)
CGCACCATTGGTGCTCAAGAATGTA
NONE
OsAffx.13774.1.S1_at--761--10491Chr04:6356309..6356328 (20 bp)
TTAATATATCAACCACTGTCTGCAA
LOC_Os04g11630
OsAffx.13774.1.S1_at--863--5532Chr04:6367171..6367195 (25 bp)
GAAACATTATAACTTCCTGGAAGAA
NONE
Target Sequence 
GGGCAAGATTGAGTTTCCAAAGGTTAATAAAGAAGAAACCGACAAGGAACCTGGCAATGGTCAAGAAGAGATATTCATAC
TAAGTGCTCTAGTACTAGGACTCCGGATAGAGAAGGAAGTTCCTGCGCAAAAGAAGATCAAGACCCAGAGATCGGCTTGG
CTAAATGGTCAAGGATTAAGAAAAGGAATAAGTTCATTTGAGGTGAGCGAGGCGGCGCCCTCGCCGCGCTCCAACTCGGA
GCCACCGCCTTCCTCTGCCCGGCCTCCTCCCCCGCCCTCGCCGCCGCCGCCTCAGCTTCCAGGCTCCTCCCTCACCGGAC
CATCGCCTCCATCATCCTCCTCGCCCTGGGTGCTCAGCGTCTTCAGGGAGCTCAACCCCAAGGAGATGCTGGCCAGGAAC
ACACCCAAGTACACAAAATGCATGTTCAGTGCAATTCTAGAATATAGTGTTGTGACCGCACCATTGGTGCTCAAGAATGT
AAAAAGAGAAATTAATATATCAACCACTGTCTGCAAAATTGATGTAAAAACATTGAAACATTATAACTTCCTGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis