Browse Element(s) Details


OsAffx.13818.1.S1_at

Description tigr:9632.m01332
TID=OsAffx.13818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1454011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14500NANA4+8090081..8092337hypothetical protein
LOC_Os04g14510Os.17436.1.S1_at11/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14510OsAffx.3791.1.S1_x_at10/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14510OsAffx.3791.1.S1_at10/114+8097280..8106127PHD-finger family protein, expressed
LOC_Os04g14520NANA4+8110054..8112207Transposable element protein, putative, Transposase_28
LOC_Os04g14530NANA4+8113161..8113535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14540OsAffx.13818.1.S1_at11/114+8115965..8118262hypothetical protein
LOC_Os04g14550OsAffx.19542.3.S1_x_at5/114+8122380..8127818retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14560OsAffx.26022.1.S1_at9/114+8132913..8145020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14560Os.45976.1.S1_x_at3/114+8132913..8145020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14560Os.45976.1.S1_at2/114+8132913..8145020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14560Os.46306.1.S1_x_at2/114+8132913..8145020transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13818.1.S1_at--1148--1371Chr04:8116536..8116560 (25 bp)
AGACCCGGACCAGCAATGATGACAA
LOC_Os04g14540
OsAffx.13818.1.S1_at--698--1751Chr04:8116510..8116534 (25 bp)
ACCTCATTAGATTCAGCTGTGCCTC
LOC_Os04g14540
OsAffx.13818.1.S1_at--1041--8691Chr04:8116493..8116517 (25 bp)
TGTGCCTCTTGGTCTGGAGATATCC
LOC_Os04g14540
OsAffx.13818.1.S1_at--855--1331Chr04:8116436..8116460 (25 bp)
AGAGATGCTCATGCCTGGGACCCGA
LOC_Os04g14540
OsAffx.13818.1.S1_at--445--10291Chr04:8116402..8116426 (25 bp)
TTTGCCAATGCCTGTGATGACATCA
LOC_Os04g14540
OsAffx.13818.1.S1_at--850--291Chr04:8116362..8116386 (25 bp)
ATAGCGACATCGTCGGGCACAGCAT
LOC_Os04g14540
OsAffx.13818.1.S1_at--61--2311Chr04:8116306..8116330 (25 bp)
AAAGGAATCCTTCACACGGCGCGAC
LOC_Os04g14540
OsAffx.13818.1.S1_at--137--1611Chr04:8116197..8116221 (25 bp)
AGCTGCTCGACCATTCTACATTGGA
LOC_Os04g14540
OsAffx.13818.1.S1_at--250--10771Chr04:8116149..8116173 (25 bp)
TTGAGATGCTCTGCTACACCGCTAG
LOC_Os04g14540
OsAffx.13818.1.S1_at--1162--10171Chr04:8116082..8116106 (25 bp)
TATAGAGCCGCTCACACTAGTCTGG
LOC_Os04g14540
OsAffx.13818.1.S1_at--510--2031Chr04:8116067..8116091 (25 bp)
ACTAGTCTGGTTTTCTCAGTGCTAC
LOC_Os04g14540
Target Sequence 
AGACCCGGACCAGCAATGATGACAACACCTCATTAGATTCAGCTGTGCCTCTTGGTCTGGAGATATCCCGCTACATGATG
TACCTCTTCACATCGCAGCCAGAGATGCTCATGCCTGGGACCCGATCGCACCTGTTTGCCAATGCCTGTGATGACATCAC
ATTCATGGCGAAGTATAGCGACATCGTCGGGCACAGCATCACCTTAGCGCAGGCGGCACAGCAGCTCGCCAAAGGAATCC
TTCACACGGCGCGACACCGCTGGGTTTATGGGGATTGCGTGGGACCCCTCATTCCCAAGGCATGCGAGCTTGCTGACGCG
CTCATCTTCTTCATGGAGGAGCTGCTCGACCATTCTACATTGGAGAAAATGGTGCGAGATGTGTGGATTGAGATGCTCTG
CTACACCGCTAGCCGATGCGGGGGGTACCTGCACGCTGTCAGCCTAGGCAGCGGTATAGAGCCGCTCACACTAGTCTGGT
TTTCTCAGTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis