Browse Element(s) Details


OsAffx.13887.1.S1_at

Description tigr:9632.m01868
TID=OsAffx.13887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2043011/11hypothetical protein
LOC_Os09g245601/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20400Os.52956.1.S1_at2/114+11384256..11385551Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os04g20410OsAffx.24477.2.S1_at10/114+11391620..11394147hypothetical protein
LOC_Os04g20420Os.50497.1.S1_at11/114+11396708..11398304expressed protein
LOC_Os04g20420OsAffx.26590.1.S1_at1/114+11396708..11398304expressed protein
LOC_Os04g20430OsAffx.13887.1.S1_at11/114+11408189..11408998hypothetical protein
LOC_Os04g20440NANA4+11411611..11414915transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20450NANA4+11416311..11418641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.47463.1.S1_x_at6/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.14491.2.S1_x_at4/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20474Os.7431.1.S1_a_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20474Os.7431.4.S1_x_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20490OsAffx.13888.1.S1_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20490OsAffx.13888.1.S1_x_at11/114+11431823..11432128hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010014biological_processmeristem initiation
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13887.1.S1_at--312--5191Chr04:11408406..11408430 (25 bp)
GCAATGCCGCCCTTGTCGTTCTCTT
LOC_Os04g20430
OsAffx.13887.1.S1_at--684--9691Chr04:11408520..11408544 (25 bp)
TCACTGTCTCGCTCATCGTGGCGGA
LOC_Os04g20430
OsAffx.13887.1.S1_at--179--5771Chr04:11408806..11408830 (25 bp)
GACGTCGACTTGTACCGCGCTGAGC
LOC_Os04g20430
OsAffx.13887.1.S1_at--150--4511Chr04:11408859..11408883 (25 bp)
GCCGCGTTAGTCCATTATCTTGCAT
LOC_Os04g20430
OsAffx.13887.1.S1_at--949--151Chr04:11408872..11408896 (25 bp)
ATTATCTTGCATGCTCTGGCCTGAG
LOC_Os04g20430
OsAffx.13887.1.S1_at--841--9091Chr04:11408883..11408907 (25 bp)
TGCTCTGGCCTGAGATCGATTGCGA
LOC_Os04g20430
OsAffx.13887.1.S1_at--290--9391Chr04:11408898..11408922 (25 bp)
TCGATTGCGACGACATTGCTTGCGT
LOC_Os04g20430
OsAffx.13887.1.S1_at--636--2071Chr04:11408910..11408934 (25 bp)
ACATTGCTTGCGTGCGTGCGTTGGC
LOC_Os04g20430
OsAffx.13887.1.S1_at--218--4012Chr04:11408924..11408948 (25 bp)
CGTGCGTTGGCTTTGATCGATGTGC
LOC_Os04g20430
OsAffx.13887.1.S1_at--939--511Chr04:11408939..11408963 (25 bp)
ATCGATGTGCCGTCGTTGTTGATGT
LOC_Os04g20430
OsAffx.13887.1.S1_at--1041--771Chr04:11408943..11408967 (25 bp)
ATGTGCCGTCGTTGTTGATGTGTGC
LOC_Os04g20430
Target Sequence 
GCAATGCCGCCCTTGTCGTTCTCTTCCCACGCCCGACCTTCTCAGACCTGCTCCGCCGTGGGCGACGTGCGCCCTTCCTT
ACTCTGCTTCCCCGCGTTGCGGCGCATGCCAACCTCACTGTCTCGCTCATCGTGGCGGAGGAGATGGCGAGGATAGCGGG
AGCGACTGCGGCGGCACTCGCGGTGGGAGCGGCGGAGGACGGCGAGGACGTGGCGAAGTGGCACGGGGCGACGTCGGTCA
CCGGGGCTCGAGCTTGTCGCGGCAGAGGAGATGGCGAGGATGGCGGGAGCGGCAGAGGAGGCGAGGAGGAGAGTCGCGTC
GTCGTCGCCAACTGCGGCCACTCCCGCGGCGGAATGTATCCATGGTGCTCGTCGCCGGCTTCACCTCCGCCTTCATCCGC
GACGTCGACTTGTACCGCGCTGAGCCCTGGGACCTCCTGCTGCCGTCGCTGCCGCCGCGTTAGTCCATTATCTTGCATGC
TCTGGCCTGAGATCGATTGCGACGACATTGCTTGCGTGCGTGCGTTGGCTTTGATCGATGTGCCGTCGTTGTTGATGTGT
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis