Browse Element(s) Details


OsAffx.13906.1.S1_at

Description tigr:9632.m01972
TID=OsAffx.13906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2146011/11hypothetical protein
LOC_Os11g181601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21430OsAffx.3846.1.S1_at11/114+12094181..12095109expressed protein
LOC_Os04g21440OsAffx.26046.1.S1_at1/114+12099320..12100374Transposable element protein, putative, Retrotrans_gag, expressed
LOC_Os04g21450NANA4+12101955..12103602hypothetical protein
LOC_Os04g21460OsAffx.13906.1.S1_at11/114+12114377..12115331hypothetical protein
LOC_Os04g21470OsAffx.26085.1.S1_at11/114+12118172..12118648hypothetical protein
LOC_Os04g21470OsAffx.26085.1.S1_x_at11/114+12118172..12118648hypothetical protein
LOC_Os04g21480NANA4+12121568..12124390retrotransposon protein, putative, unclassified
LOC_Os04g21490OsAffx.13907.1.S1_at11/114+12124918..12125846hypothetical protein
LOC_Os04g21500NANA4+12130292..12135587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21510Os.52979.1.S1_at5/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.55650.1.A1_at4/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.46314.3.S1_at4/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.21756.5.A1_x_at3/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.22143.1.S1_at2/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.7307.3.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.7362.1.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.22646.1.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13906.1.S1_at--98--6071Chr04:12114413..12114437 (25 bp)
GAGTTCAACGGCAGTGGATCCGCAC
LOC_Os04g21460
OsAffx.13906.1.S1_at--722--891Chr04:12114444..12114468 (25 bp)
AGGCCGCATCCGCTAGATCGATGAT
LOC_Os04g21460
OsAffx.13906.1.S1_at--374--1571Chr04:12114480..12114504 (25 bp)
AGCTAGGGAGGCCTGCTGCTCATCT
LOC_Os04g21460
OsAffx.13906.1.S1_at--991--3831Chr04:12114492..12114516 (25 bp)
CTGCTGCTCATCTGAGGCTAGTGGA
LOC_Os04g21460
OsAffx.13906.1.S1_at--165--8311Chr04:12114507..12114531 (25 bp)
GGCTAGTGGAGGCATATCTGACCCT
LOC_Os04g21460
OsAffx.13906.1.S1_at--688--1791Chr04:12114527..12114551 (25 bp)
ACCCTCCTATCACCAGTAACGGTAG
LOC_Os04g21460
OsAffx.13906.1.S1_at--569--9811Chr04:12114543..12114567 (25 bp)
TAACGGTAGATCCATCGAGGCCGAT
LOC_Os04g21460
OsAffx.13906.1.S1_at--1005--1791Chr04:12114572..12114596 (25 bp)
ACCCCTGTCACCAACATTAACATGT
LOC_Os04g21460
OsAffx.13906.1.S1_at--945--131Chr04:12114587..12114611 (25 bp)
ATTAACATGTGCCTCACTGCTGAAC
LOC_Os04g21460
OsAffx.13906.1.S1_at--963--8971Chr04:12114607..12114631 (25 bp)
TGAACTCACCTCTACATCGCACTGT
LOC_Os04g21460
OsAffx.13906.1.S1_at--20--4092Chr04:12114641..12114665 (25 bp)
CGAGCTTCTGCCGAGAGAGAGATAG
LOC_Os04g21460
Target Sequence 
GAGTTCAACGGCAGTGGATCCGCACCTCTTGAGGCCGCATCCGCTAGATCGATGATGGAAATGGAGAAGCTAGGGAGGCC
TGCTGCTCATCTGAGGCTAGTGGAGGCATATCTGACCCTCCTATCACCAGTAACGGTAGATCCATCGAGGCCGATGGTCA
CCCCTGTCACCAACATTAACATGTGCCTCACTGCTGAACTCACCTCTACATCGCACTGTCGTCGACGCCGAGCTTCTGCC
GAGAGAGAGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis