Browse Element(s) Details


OsAffx.13907.1.S1_at

Description tigr:9632.m01975
TID=OsAffx.13907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2149011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21440OsAffx.26046.1.S1_at1/114+12099320..12100374Transposable element protein, putative, Retrotrans_gag, expressed
LOC_Os04g21450NANA4+12101955..12103602hypothetical protein
LOC_Os04g21460OsAffx.13906.1.S1_at11/114+12114377..12115331hypothetical protein
LOC_Os04g21470OsAffx.26085.1.S1_at11/114+12118172..12118648hypothetical protein
LOC_Os04g21470OsAffx.26085.1.S1_x_at11/114+12118172..12118648hypothetical protein
LOC_Os04g21480NANA4+12121568..12124390retrotransposon protein, putative, unclassified
LOC_Os04g21490OsAffx.13907.1.S1_at11/114+12124918..12125846hypothetical protein
LOC_Os04g21500NANA4+12130292..12135587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21510Os.52979.1.S1_at5/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.55650.1.A1_at4/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.46314.3.S1_at4/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.21756.5.A1_x_at3/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.22143.1.S1_at2/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.7307.3.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.7362.1.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.22646.1.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21520OsAffx.23366.1.S1_at1/114+12146637..12148267transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13907.1.S1_at--275--2731Chr04:12125714..12125738 (25 bp)
AAGACTTTTGTGTGGCCATTGTTGA
LOC_Os04g21490
OsAffx.13907.1.S1_at--771--8811Chr04:12125695..12125719 (25 bp)
TGTTGAGCCAATCCCCTTGGAGCAA
LOC_Os04g21490
OsAffx.13907.1.S1_at--858--5731Chr04:12125670..12125694 (25 bp)
GACTGGGATCATCATTGGGCCCTCA
LOC_Os04g21490
OsAffx.13907.1.S1_at--894--5451Chr04:12125560..12125649 (25 bp)
GAACTTCACTACGAGGGATGCTTTG
LOC_Os04g21490
OsAffx.13907.1.S1_at--183--10531Chr04:12125504..12125528 (25 bp)
TTCACCCTGGTACTTTTGTTAATCA
LOC_Os04g21490
OsAffx.13907.1.S1_at--343--8031Chr04:12125462..12125486 (25 bp)
GGAGGGCGGCAAACTTTCATAGAGA
LOC_Os04g21490
OsAffx.13907.1.S1_at--8--6831Chr04:12125431..12125455 (25 bp)
GTTTATGTTCCTAGATTTCCCGCTA
LOC_Os04g21490
OsAffx.13907.1.S1_at--1153--10211Chr04:12125401..12125425 (25 bp)
TATTGATCTCCATCATGTGCACCTG
LOC_Os04g21490
OsAffx.13907.1.S1_at--547--771Chr04:12125387..12125411 (25 bp)
ATGTGCACCTGGCAGTTGCTTCTTT
LOC_Os04g21490
OsAffx.13907.1.S1_at--551--711Chr04:12125120..12125144 (25 bp)
ATGATGACCCCGATGCTGGCAATGT
LOC_Os04g21490
OsAffx.13907.1.S1_at--556--6551Chr04:12124951..12124975 (25 bp)
GATTATACCACAGCAGATGGCCACA
LOC_Os04g21490
Target Sequence 
AAGACTTTTGTGTGGCCATTGTTGAGCCAATCCCCTTGGAGCAAGACTGGGATCATCATTGGGCCCTCATTGCCAACTTC
ATTCAAGATGAACTTCACTACGAGGGATGCTTTGGTCCTCTCTTTGCCTGAGTTCTATGATGGGGTTCACCCTGGTACTT
TTGTTAATCATGACCAAGGTCCTAATTGGAGGGCGGCAAACTTTCATAGAGAAGGCTGGTTTATGTTCCTAGATTTCCCG
CTAGATTTTATTGATCTCCATCATGTGCACCTGGCAGTTGCTTCTTTTGGGAGATTTTATAAATTCCCCCCTGAAGAGGA
CCTCCCCCCTGCTGGTCCTCAGCCAGGCCCTGATGATGCAACTGATGATGACCCCGATGCTGGCAATGTTTGGCAGTTTG
GCAACCCTGGTAACCAGGGAGCTGGAGGTTGGGATGAGGCAGTGCAGCAGCAACAGGCTGCAAATGAACAACAAGAAGAT
GCATGGGGCCAAGATCATCCAATGGGGCAGATTGAGGAGAACCCAGGACAATTGATTATACCACAGCAGATGGCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis