Browse Element(s) Details


OsAffx.13951.1.S1_at

Description tigr:9632.m02270
TID=OsAffx.13951.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2431910/1123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g2447810/1123 kDa jasmonate-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24290OsAffx.3879.1.S1_x_at1/114+13888243..13890347Protein kinase domain containing protein
LOC_Os04g24300OsAffx.3879.1.S1_x_at11/114+13894936..13900029Protein kinase domain containing protein, expressed
LOC_Os04g24310OsAffx.13951.2.S1_s_at11/114+13909491..13911306hypothetical protein
LOC_Os04g24310OsAffx.13951.2.S1_at9/114+13909491..13911306hypothetical protein
LOC_Os04g24319Os.23116.1.A1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.2.S1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.1.S1_at10/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24328Os.55859.1.S1_at1/114+13913295..1391418123 kDa jasmonate-induced protein, putative
LOC_Os04g24340OsAffx.26128.1.S1_at11/114+13924359..13925560phytase, putative
LOC_Os04g24340OsAffx.28544.2.S1_x_at1/114+13924359..13925560phytase, putative
LOC_Os04g24350NANA4+13927740..13931709retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24360NANA4+13933066..13933691hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13951.1.S1_at--890--4332Chr04:14016220..14016244 (25 bp)
CCAGGTCCGGGACTTCATGGTCGCA
LOC_Os04g24478
OsAffx.13951.1.S1_at--441--1032Chr04:14016222..14016246 (25 bp)
AGGTCCGGGACTTCATGGTCGCATG
LOC_Os04g24478
OsAffx.13951.1.S1_at--481--7252Chr04:14016224..14016248 (25 bp)
GTCCGGGACTTCATGGTCGCATGGT
LOC_Os04g24478
OsAffx.13951.1.S1_at--17--9292Chr04:14016225..14016249 (25 bp)
TCCGGGACTTCATGGTCGCATGGTC
LOC_Os04g24478
OsAffx.13951.1.S1_at--383--3992Chr04:14016227..14016251 (25 bp)
CGGGACTTCATGGTCGCATGGTCCC
LOC_Os04g24478
OsAffx.13951.1.S1_at--840--9232Chr04:14016253..14016277 (25 bp)
TCCTTGGAGCGCCACGCAGAACTCT
LOC_Os04g24478
OsAffx.13951.1.S1_at--1020--8532Chr04:14016257..14016278 (22 bp)
TGGAGCGCCACGCAGAACTCTGCTT
LOC_Os04g24478
OsAffx.13951.1.S1_at--482--8092Chr04:14016258..14016278 (21 bp)
GGAGCGCCACGCAGAACTCTGCTTA
LOC_Os04g24478
OsAffx.13951.1.S1_at--547--1652Chr04:14016260..14016550 (25 bp)
AGCGCCACGCAGAACTCTGCTTACA
LOC_Os04g24478
OsAffx.13951.1.S1_at--653--1831NONE
ACGCAGAACTCTGCTTACACCGAGG
NONE
OsAffx.13951.1.S1_at--143--5052Chr04:14016268..14016558 (25 bp)
GCAGAACTCTGCTTACACCGAGGTA
LOC_Os04g24478
Target Sequence 
CCAGGTCCGGGACTTCATGGTCGCATGGTCCCTTCCTTGGAGCGCCACGCAGAACTCTGCTTACACCGAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis