Browse Element(s) Details


OsAffx.14045.1.S1_at

Description tigr:9632.m02883
TID=OsAffx.14045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3041010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30370NANA4+17934039..17938750Protein kinase domain containing protein
LOC_Os04g30380Os.27639.1.S1_x_at9/114+17939380..17944436transposon protein, putative, unclassified, expressed
LOC_Os04g30380OsAffx.8980.1.S1_at4/114+17939380..17944436transposon protein, putative, unclassified, expressed
LOC_Os04g30390OsAffx.14044.1.S1_at10/114+17950235..17952489hypothetical protein
LOC_Os04g30410Os.55085.1.S1_at11/114+17962479..17966088hypothetical protein
LOC_Os04g30410OsAffx.14045.1.S1_at10/114+17962479..17966088hypothetical protein
LOC_Os04g30420OsAffx.3952.1.S1_s_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_at11/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30420Os.51439.1.S1_x_at10/114+17981338..17984641Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os04g30430Os.17033.1.S1_at11/114+17984772..17989714Nuclear transport factor 2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14045.1.S1_at--1138--2871Chr04:17964905..17964929 (25 bp)
AAGGGAGGCACTAGGAACTTTAGCT
LOC_Os04g30410
OsAffx.14045.1.S1_at--361--8251Chr04:17964911..17964935 (25 bp)
GGCACTAGGAACTTTAGCTGGTCAG
LOC_Os04g30410
OsAffx.14045.1.S1_at--484--931NONE
AGGAACTTTAGCTGGTCAGAGACAT
NONE
OsAffx.14045.1.S1_at--941--7811Chr04:17965993..17966014 (22 bp)
GGTCAGAGACATGGACAACCTTGCT
LOC_Os04g30410
OsAffx.14045.1.S1_at--198--5991Chr04:17965995..17966019 (25 bp)
GAGACATGGACAACCTTGCTGGCTT
LOC_Os04g30410
OsAffx.14045.1.S1_at--56--851Chr04:17966000..17966024 (25 bp)
ATGGACAACCTTGCTGGCTTTTAGC
LOC_Os04g30410
OsAffx.14045.1.S1_at--1092--2631Chr04:17966006..17966030 (25 bp)
AACCTTGCTGGCTTTTAGCTCATGG
LOC_Os04g30410
OsAffx.14045.1.S1_at--817--3631Chr04:17966009..17966033 (25 bp)
CTTGCTGGCTTTTAGCTCATGGCAT
LOC_Os04g30410
OsAffx.14045.1.S1_at--17--8311Chr04:17966015..17966039 (25 bp)
GGCTTTTAGCTCATGGCATTTTCAG
LOC_Os04g30410
OsAffx.14045.1.S1_at--189--10011Chr04:17966021..17966045 (25 bp)
TAGCTCATGGCATTTTCAGTTTCAT
LOC_Os04g30410
OsAffx.14045.1.S1_at--1129--10311Chr04:17966034..17966058 (25 bp)
TTTCAGTTTCATCGATGTACTGGAC
LOC_Os04g30410
Target Sequence 
AAGGGAGGCACTAGGAACTTTAGCTGGTCAGAGACATGGACAACCTTGCTGGCTTTTAGCTCATGGCATTTTCAGTTTCA
TCGATGTACTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis