Browse Element(s) Details


OsAffx.14054.1.S1_at

Description tigr:9632.m02919
TID=OsAffx.14054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 134792 chitinase, class V
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3077011/11Glycosyl hydrolases family 18 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30730Os.12817.1.S1_at10/114+18181823..1818374460S ribosomal protein L35, putative, expressed
LOC_Os04g30740Os.54218.1.S1_at11/114+18184245..18188169Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os04g30750OsAffx.14053.1.S1_at11/114+18190528..18192911expressed protein
LOC_Os04g30760Os.22815.1.S1_at11/114+18195311..182002503-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os04g30770OsAffx.14054.1.S1_at11/114+18205252..18206991Glycosyl hydrolases family 18 protein, expressed
LOC_Os04g30780Os.8580.1.S1_at11/114+18213820..18218312Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g30790Os.22695.1.S1_s_at11/114+18219938..18223014expressed protein
LOC_Os04g30800NANA4+18226935..18230195ER lumen protein retaining receptor, putative

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14054.1.S1_at--137--771Chr04:18205967..18205991 (25 bp)
ATGTCCTACGCCGAGGTCCAGTGGC
LOC_Os04g30770
OsAffx.14054.1.S1_at--20--9291Chr04:18205886..18205910 (25 bp)
TCCGTCGCGTCGTACGTGTCCGTCG
LOC_Os04g30770
OsAffx.14054.1.S1_at--72--3791Chr04:18205775..18205799 (25 bp)
CTCTGGCCGGTCAACTACGACGATG
LOC_Os04g30770
OsAffx.14054.1.S1_at--581--7831Chr04:18205767..18205791 (25 bp)
GGTCAACTACGACGATGCCAACCTC
LOC_Os04g30770
OsAffx.14054.1.S1_at--550--2631Chr04:18205751..18205772 (22 bp)
AACCTCACCGTGTCGCGGCGAGCAT
LOC_Os04g30770
OsAffx.14054.1.S1_at--1005--8371Chr04:18205648..18205668 (21 bp)
GGCGAGCATCACAAGTCTGGACACA
LOC_Os04g30770
OsAffx.14054.1.S1_at--15--3271Chr04:18205627..18205651 (25 bp)
CACAGACCAAAATCTCGCCGGAGTT
LOC_Os04g30770
OsAffx.14054.1.S1_at--908--3951Chr04:18205609..18205633 (25 bp)
CGGAGTTCAAGAACGTCACCGGTGG
LOC_Os04g30770
OsAffx.14054.1.S1_at--586--9411Chr04:18205493..18205517 (25 bp)
TCGTCGTTCTCACGGTTATCTTGGA
LOC_Os04g30770
OsAffx.14054.1.S1_at--66--5971Chr04:18205470..18205494 (25 bp)
GAGAATGCTGGATGTGCGTCTCCAT
LOC_Os04g30770
OsAffx.14054.1.S1_at--1050--8691Chr04:18205458..18205482 (25 bp)
TGTGCGTCTCCATCTGGGTGCTCTT
LOC_Os04g30770
Target Sequence 
ATGTCCTACGCCGAGGTCCAGTGGCTCGCCGCGACGGCGACGCGCGGCTCCCGCGCGGTGATCACCGCCTACGACAACGC
CTCCGTCGCGTCGTACGTGTCCGTCGGCGACGTCTGGGTCGCGTTCGACGGCGTGGCCGTCGTCGCCGAGAAGCTCGCCT
TCGCCGCGCGGTGCGGCCTCCTCGGCTACTTCCTCTGGCCGGTCAACTACGACGATGCCAACCTCACCGTGTCGCGGCGA
GCATCACAAGTCTGGACACAGACCAAAATCTCGCCGGAGTTCAAGAACGTCACCGGTGGCGCCCGGCAGACGCAGGCGCC
GGTGCAGCGGCCGCCGGCGCTCCAGTCGCCTGCGCCGACCACCGCGCCGATGTCGTCGTCGTCGACGACGTCGTCGTTCT
CACGGTTATCTTGGAGAATGCTGGATGTGCGTCTCCATCTGGGTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis