Browse Element(s) Details


OsAffx.14064.1.S1_at

Description tigr:9632.m02962
TID=OsAffx.14064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3116010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein
LOC_Os04g31160OsAffx.14064.1.S1_at10/114+18441403..18445020hypothetical protein
LOC_Os04g31170OsAffx.26266.1.S1_at11/114+18450202..18455962expressed protein
LOC_Os04g31180OsAffx.29169.1.S1_at7/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31180OsAffx.29169.3.S1_at4/114+18467302..18471613retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14064.1.S1_at--341--2331Chr04:18444907..18444976 (25 bp)
AAAGATTGGGCTTCACTTCCTTTCT
LOC_Os04g31160
OsAffx.14064.1.S1_at--409--10591NONE
TTCTGTCTAAATCCTACCATCATCG
NONE
OsAffx.14064.1.S1_at--911--9951Chr04:18442096..18442120 (25 bp)
TACCATCATCGGGAATACCAAGCAA
LOC_Os04g31160
OsAffx.14064.1.S1_at--318--311Chr04:18442082..18442106 (25 bp)
ATACCAAGCAACAATCCGCTCCAAG
LOC_Os04g31160
OsAffx.14064.1.S1_at--1048--5891Chr04:18442048..18442072 (25 bp)
GAGCTATTTATGGAAACAACCCTAC
LOC_Os04g31160
OsAffx.14064.1.S1_at--686--7511Chr04:18441725..18441749 (25 bp)
GTGGAGAATGGATTCCTGTGCTGAA
LOC_Os04g31160
OsAffx.14064.1.S1_at--438--10651Chr04:18441713..18441737 (25 bp)
TTCCTGTGCTGAAGGCAGTACTGGT
LOC_Os04g31160
OsAffx.14064.1.S1_at--372--7711Chr04:18441492..18441516 (25 bp)
GGTGGAAGTAAATCTACCAAGCGAA
LOC_Os04g31160
OsAffx.14064.1.S1_at--96--2751Chr04:18441468..18441492 (25 bp)
AAGAAGATTAATTCCAGTACTGAGA
LOC_Os04g31160
OsAffx.14064.1.S1_at--447--3371Chr04:18441454..18441478 (25 bp)
CAGTACTGAGAAAAAGAAGCCCTTG
LOC_Os04g31160
OsAffx.14064.1.S1_at--819--5411Chr04:18441439..18441463 (25 bp)
GAAGCCCTTGAGTATTGGAAATGAA
LOC_Os04g31160
Target Sequence 
AAAGATTGGGCTTCACTTCCTTTCTATTTTTCTGTCTAAATCCTACCATCATCGGGAATACCAAGCAACAATCCGCTCCA
AGCCTGAAGTTGAGCTATTTATGGAAACAACCCTACAAAACAGGACAAATATATTCAAAGGACGAAAACTACAGAAGAAG
TGGAGAATGGATTCCTGTGCTGAAGGCAGTACTGGTGGAAGTAAATCTACCAAGCGAAAGAAGATTAATTCCAGTACTGA
GAAAAAGAAGCCCTTGAGTATTGGAAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis