Browse Element(s) Details


OsAffx.14157.1.S1_at

Description tigr:9632.m03418
TID=OsAffx.14157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kinesin motor domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3551011/11CENP-E-like kinetochore protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35470NANA4+21396433..21398027retrotransposon protein, putative, unclassified
LOC_Os04g35480Os.11755.1.S1_at11/114+21404275..21407936MiaB-like tRNA modifying enzyme, archaeal-type family protein, expressed
LOC_Os04g35490OsAffx.26343.1.S1_x_at11/114+21408362..21410433expressed protein
LOC_Os04g35490Os.36307.1.S1_at11/114+21408362..21410433expressed protein
LOC_Os04g35500NANA4+21413253..21414522ZF-HD protein dimerisation region containing protein, expressed
LOC_Os04g35510Os.36698.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35510OsAffx.14157.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35520Os.26502.1.S1_a_at11/114+21435571..21439929L-ascorbate peroxidase 7, chloroplast precursor, putative, expressed
LOC_Os04g35530OsAffx.14158.1.S1_at11/114+21442184..21446637hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14157.1.S1_at--415--8071Chr04:21423459..21423483 (25 bp)
GGAGCAGTATCCAGAGTGACACAAA
LOC_Os04g35510
OsAffx.14157.1.S1_at--415--6111Chr04:21423446..21423470 (25 bp)
GAGTGACACAAAACGCCGTGATCAG
LOC_Os04g35510
OsAffx.14157.1.S1_at--43--3071Chr04:21423413..21423437 (25 bp)
AATCTTTGTAGAGGAGCTGCAGAAA
LOC_Os04g35510
OsAffx.14157.1.S1_at--810--2331Chr04:21423391..21423415 (25 bp)
AAAGAGTTGGTTGCTAGCTGTCAGA
LOC_Os04g35510
OsAffx.14157.1.S1_at--132--5631Chr04:21423349..21423373 (25 bp)
GACACATTGTCCCAAAGGGCCCGAA
LOC_Os04g35510
OsAffx.14157.1.S1_at--161--3291Chr04:21423255..21423279 (25 bp)
CAAACATGTGGATGCTTGTTGCAGA
LOC_Os04g35510
OsAffx.14157.1.S1_at--1090--2231Chr04:21423218..21423242 (25 bp)
AAATTCTCAGGAGGACTTGTTCCAA
LOC_Os04g35510
OsAffx.14157.1.S1_at--423--8131Chr04:21423206..21423230 (25 bp)
GGACTTGTTCCAATTCAAGGCAACA
LOC_Os04g35510
OsAffx.14157.1.S1_at--110--2971Chr04:21423178..21423202 (25 bp)
AATGGCTATCATTCATCGAAGAGTG
LOC_Os04g35510
OsAffx.14157.1.S1_at--1113--8631Chr04:21423106..21423130 (25 bp)
TGGGATGGTGTCAGTGTCAGCACTT
LOC_Os04g35510
OsAffx.14157.1.S1_at--10--5151Chr04:21423073..21423097 (25 bp)
GCAAAAGCGGCATACAATGTTCAAA
LOC_Os04g35510
Target Sequence 
GGAGCAGTATCCAGAGTGACACAAAACGCCGTGATCAGGAGAATGGAATCTTTGTAGAGGAGCTGCAGAAAGAGTTGGTT
GCTAGCTGTCAGAGGGAGGCTGTGTTAGAGGACACATTGTCCCAAAGGGCCCGAAGAGAGAGTGAACTTCTAAAGGTTAT
TGAAGATGCAAAATGCCATGAGCATGATTTGGAAAATGAACTGGCAAACATGTGGATGCTTGTTGCAGAGTTAAAGAAAG
AAAATTCTCAGGAGGACTTGTTCCAATTCAAGGCAACACAAAATGGCTATCATTCATCGAAGAGTGATACTGGCAGGATG
ATGAGTGGAATGGAAGCTTCAGATAATAGGAACTGGGATGGTGTCAGTGTCAGCACTTATGAAGAAGCAAAAGCGGCATA
CAATGTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis