Browse Element(s) Details


OsAffx.14169.1.S1_at

Description tigr:9632.m03474
TID=OsAffx.14169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=5333-4002
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3603011/11AIG1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35990OsAffx.14167.1.S1_at9/114+21754818..21759223F-box domain containing protein
LOC_Os04g35990OsAffx.26351.1.S1_at1/114+21754818..21759223F-box domain containing protein
LOC_Os04g36000OsAffx.26351.1.S1_at10/114+21761415..21764449F-box domain containing protein
LOC_Os04g36010OsAffx.26352.1.S1_at11/114+21769611..21773722hypothetical protein
LOC_Os04g36020OsAffx.14168.1.S1_at11/114+21777251..21778510F-box domain containing protein
LOC_Os04g36030OsAffx.14169.1.S1_at11/114+21778951..21782471AIG1 family protein
LOC_Os04g36030Os.52782.1.S1_at1/114+21778951..21782471AIG1 family protein
LOC_Os04g36040Os.49521.1.S1_at11/114+21783468..21788376POT family protein, expressed
LOC_Os04g36040Os.22928.1.S1_x_at1/114+21783468..21788376POT family protein, expressed
LOC_Os04g36050Os.18612.1.S1_s_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.1.S1_x_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.2.S1_at10/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14169.1.S1_at--1101--1171Chr04:21780545..21780569 (25 bp)
AGTAGTACTCAGGACCGCCAGGCGC
LOC_Os04g36030
OsAffx.14169.1.S1_at--871--4911Chr04:21780583..21780607 (25 bp)
GCTTGATGCAGTGGACTTTGTCGTA
LOC_Os04g36030
OsAffx.14169.1.S1_at--631--8711Chr04:21780601..21780625 (25 bp)
TGTCGTATCAAGCAATCATGGGAAA
LOC_Os04g36030
OsAffx.14169.1.S1_at--759--8151Chr04:21780621..21780645 (25 bp)
GGAAACCATTTTCAAATCAGCTGTT
LOC_Os04g36030
OsAffx.14169.1.S1_at--171--9911Chr04:21780646..21780737 (25 bp)
TACTCAGATTCAGGAGGTGCATCAC
LOC_Os04g36030
OsAffx.14169.1.S1_at--570--4391Chr04:21780750..21780774 (25 bp)
GCCAATTCTGAGGTGTATTCATCAA
LOC_Os04g36030
OsAffx.14169.1.S1_at--662--5991Chr04:21780780..21780804 (25 bp)
GAGACTGACAGTTACATTTCACTCA
LOC_Os04g36030
OsAffx.14169.1.S1_at--1081--4831Chr04:21782108..21782132 (25 bp)
GCTAAACGGTACAATCCTGAGGATG
LOC_Os04g36030
OsAffx.14169.1.S1_at--218--5451Chr04:21782177..21782201 (25 bp)
GAACGAGATGACGAAGGCAATCCTA
LOC_Os04g36030
OsAffx.14169.1.S1_at--692--411Chr04:21782217..21782241 (25 bp)
ATCAGGAGACTGAGGCTGAGCCTAG
LOC_Os04g36030
OsAffx.14169.1.S1_at--368--6051Chr04:21782394..21782418 (25 bp)
GAGATTCGCAGGCTTAGAGATGATC
LOC_Os04g36030
Target Sequence 
AGTAGTACTCAGGACCGCCAGGCGCAGCGGAAAAAAATGCTTGATGCAGTGGACTTTGTCGTATCAAGCAATCATGGGAA
ACCATTTTCAAATCAGCTGTTTACTCAGATTCAGGAGGTGCATCACAGACAGAAAGATGCCAATTCTGAGGTGTATTCAT
CAATGCAAGAGACTGACAGTTACATTTCACTCATAACCAAGATGGTAGAAGAAAAGCTAAACGGTACAATCCTGAGGATG
GAACAACAGCTTCTGAAAGAGCAGGAAGCGAGGCTGGATATACAGAACGAGATGACGAAGGCAATCCTAAGATCAGAAGA
GGACATCAGGAGACTGAGGCTGAGCCTAGAGAAGGCTGAACAAGAGAGTAACAATGCTCGAGAGGAAAACAAGAGATTTA
GAGAATCGGAGAAGGCTAGTAAAGAACAGGAGAAGCAAACAGAAGCTGAGATTCAGAAGCTTAAAGAGAAGATGGAGAAG
GACAGAGAAGAAAGGGAGGAGGAGATTCGCAGGCTTAGAGATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis