Browse Element(s) Details


OsAffx.14176.1.S1_at

Description tigr:9632.m03529
TID=OsAffx.14176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3756011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14176.1.S1_at--389--4071Chr04:22131413..22131437 (25 bp)
CGAGAACGTAGAGTCGGCTCACGAA
LOC_Os04g37560
OsAffx.14176.1.S1_at--163--6111Chr04:22131423..22131447 (25 bp)
GAGTCGGCTCACGAAGAGATGCGCA
LOC_Os04g37560
OsAffx.14176.1.S1_at--936--8311Chr04:22131428..22131452 (25 bp)
GGCTCACGAAGAGATGCGCACCATC
LOC_Os04g37560
OsAffx.14176.1.S1_at--89--2791Chr04:22131436..22131460 (25 bp)
AAGAGATGCGCACCATCTCCTACAA
LOC_Os04g37560
OsAffx.14176.1.S1_at--410--1731Chr04:22131447..22131471 (25 bp)
ACCATCTCCTACAAGGCGTGGGCCC
LOC_Os04g37560
OsAffx.14176.1.S1_at--813--4191Chr04:22131482..22131506 (25 bp)
CCCGAAGCTTGTTGATTTAGGAAAT
LOC_Os04g37560
OsAffx.14176.1.S1_at--603--6531Chr04:22131495..22131519 (25 bp)
GATTTAGGAAATGGCGTCACCGAGC
LOC_Os04g37560
OsAffx.14176.1.S1_at--508--8151Chr04:22131501..22131525 (25 bp)
GGAAATGGCGTCACCGAGCAACGAC
LOC_Os04g37560
OsAffx.14176.1.S1_at--171--4651Chr04:22131508..22131532 (25 bp)
GCGTCACCGAGCAACGACGCCTTGT
LOC_Os04g37560
OsAffx.14176.1.S1_at--294--431Chr04:22131535..22131559 (25 bp)
ATCTTGAACATGTTGGGCACCACAA
LOC_Os04g37560
OsAffx.14176.1.S1_at--640--8771Chr04:22131545..22131569 (25 bp)
TGTTGGGCACCACAACACGACAACT
LOC_Os04g37560
Target Sequence 
CGAGAACGTAGAGTCGGCTCACGAAGAGATGCGCACCATCTCCTACAAGGCGTGGGCCCGCTTTTTGCCCCCGAAGCTTG
TTGATTTAGGAAATGGCGTCACCGAGCAACGACGCCTTGTCCATCTTGAACATGTTGGGCACCACAACACGACAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis