Browse Element(s) Details


OsAffx.14177.1.S1_at

Description tigr:9632.m03532
TID=OsAffx.14177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3759011/11F-box family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14177.1.S1_at--802--2731Chr04:22140092..22140116 (25 bp)
AAGAAGTACGCCGAATTCCTTCCTG
LOC_Os04g37590
OsAffx.14177.1.S1_at--223--10671Chr04:22140073..22140097 (25 bp)
TTCCTGCGCTGAGAGTGCTGGACAT
LOC_Os04g37590
OsAffx.14177.1.S1_at--400--5151Chr04:22140046..22140070 (25 bp)
GCAACTGCCTTAAGATCTCATCGAG
LOC_Os04g37590
OsAffx.14177.1.S1_at--282--8791Chr04:22139952..22139976 (25 bp)
TGTTCCCCATGGTTACAATGCGGTG
LOC_Os04g37590
OsAffx.14177.1.S1_at--949--3191Chr04:22139937..22139961 (25 bp)
CAATGCGGTGCCTAATGTGGTCAAC
LOC_Os04g37590
OsAffx.14177.1.S1_at--166--1871Chr04:22139914..22139938 (25 bp)
ACGACGAGGCCTTGGCAATCGCGAA
LOC_Os04g37590
OsAffx.14177.1.S1_at--836--3631Chr04:22139861..22139885 (25 bp)
CTTGCCTATGGCTTGTTCAGCGATA
LOC_Os04g37590
OsAffx.14177.1.S1_at--859--9651Chr04:22139845..22139869 (25 bp)
TCAGCGATACCGGACTTGGTGCCAT
LOC_Os04g37590
OsAffx.14177.1.S1_at--175--4931Chr04:22139793..22139817 (25 bp)
GCTTGACATACTTGGCTGCTGGAAT
LOC_Os04g37590
OsAffx.14177.1.S1_at--953--1291Chr04:22139741..22139765 (25 bp)
AGATGCTGTGCCCTGGAGTCATTCA
LOC_Os04g37590
OsAffx.14177.1.S1_at--507--9851Chr04:22139696..22139720 (25 bp)
TACAGTGACTGCTCAAGTACCGGAA
LOC_Os04g37590
Target Sequence 
AAGAAGTACGCCGAATTCCTTCCTGCGCTGAGAGTGCTGGACATCAGCAACTGCCTTAAGATCTCATCGAGTGGCATCGA
AGCGCTAGGCCGACACTGCAAGCTGCTCGTTCAGCTGAAGAGGAACATGCCTCCTCCAGATGTTCCCCATGGTTACAATG
CGGTGCCTAATGTGGTCAACGACGAGGCCTTGGCAATCGCGAACACCATGCCCGTGCTCGAGCATCTCGAGCTTGCCTAT
GGCTTGTTCAGCGATACCGGACTTGGTGCCATCCTCACCAGGTGCCCTCGGCTGCAAACGCTTGACATACTTGGCTGCTG
GAATGTCAGGCTTGAAGGTGACATTGAGTTGAGATGCTGTGCCCTGGAGTCATTCAGGGAGCCATGGGAGCCTATGTACA
GTGACTGCTCAAGTACCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis