Browse Element(s) Details


OsAffx.14189.1.S1_x_at

Description tigr:9632.m03619
TID=OsAffx.14189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TMV induced protein 1-2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3836011/11wound/stress protein, putative, expressed
LOC_Os04g383701/11dehydration stress-induced protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38310Os.9424.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38310OsAffx.14187.1.S1_at11/114+22576099..22579702expressed protein
LOC_Os04g38320NANA4+22581616..22582293expressed protein
LOC_Os04g38330Os.50311.1.S1_at10/114+22583655..22586947Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os04g38340Os.22690.2.S1_x_at10/114+22587642..22591871Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os04g38350OsAffx.14188.1.S1_at9/114+22594546..22595372hypothetical protein
LOC_Os04g38360OsAffx.14189.1.S1_x_at11/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38360Os.23121.1.A1_at7/114+22601957..22602645wound/stress protein, putative, expressed
LOC_Os04g38370OsAffx.14189.1.S1_x_at1/114+22603195..22603853dehydration stress-induced protein, putative
LOC_Os04g38380OsAffx.14190.1.S1_at10/114+22606636..22607525expressed protein
LOC_Os04g38390Os.5446.1.S1_at11/114+22610244..22611312wound/stress protein, putative, expressed
LOC_Os04g38400OsAffx.4013.1.S1_at11/114+22614946..22616283Ethylene insensitive 3 family protein, expressed
LOC_Os04g38410Os.5869.1.S1_a_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38410Os.5869.3.S1_x_at11/114+22616823..22618147Chlorophyll a-b binding protein CP24 10B, chloroplast precursor, putative, expressed
LOC_Os04g38420Os.52653.1.S1_at11/114+22618801..22621456oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14189.1.S1_x_at--1069--8631Chr04:22602410..22602434 (25 bp)
TGGGAGCCCCCGTCTGCCGCATGAA
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--705--9491Chr04:22602422..22602446 (25 bp)
TCTGCCGCATGAAGCTCGTCTCCAA
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--567--9171Chr04:22602424..22602448 (25 bp)
TGCCGCATGAAGCTCGTCTCCAACG
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--950--4971Chr04:22602428..22602452 (25 bp)
GCATGAAGCTCGTCTCCAACGGCGC
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--172--5951Chr04:22602457..22602481 (25 bp)
GAGCACCACGGGTGGTTCTGCAAGT
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--492--7791Chr04:22602502..22602526 (25 bp)
GGTCCCCACGCCAGGTGCAACAGGG
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--59--1831Chr04:22602509..22602533 (25 bp)
ACGCCAGGTGCAACAGGGCGGCGTT
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--635--3931Chr04:22602527..22602551 (25 bp)
CGGCGTTCGACGTCCAGCAGTGGCT
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--754--6972Chr04:22602570..22602594 (25 bp)
GTACCAGCTCTACGCCGAGCGGAGC
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--511--1631Chr04:22602587..22602611 (25 bp)
AGCGGAGCGTCTGCGGCAAGATCAG
LOC_Os04g38360
OsAffx.14189.1.S1_x_at--444--5891Chr04:22602591..22602615 (25 bp)
GAGCGTCTGCGGCAAGATCAGCACG
LOC_Os04g38360
Target Sequence 
TGGGAGCCCCCGTCTGCCGCATGAAGCTCGTCTCCAACGGCGCCGGCGAGCACCACGGGTGGTTCTGCAAGTCCGTCGAG
GTCACCGTCGCCGGTCCCCACGCCAGGTGCAACAGGGCGGCGTTCGACGTCCAGCAGTGGCTCGCCACCGACGCGCCGCC
GTACCAGCTCTACGCCGAGCGGAGCGTCTGCGGCAAGATCAGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14189.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis