Browse Element(s) Details


OsAffx.14208.1.S1_at

Description tigr:9632.m03754
TID=OsAffx.14208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Fasciclin domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3959011/11Fasciclin domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39570Os.50644.2.S1_x_at7/114+23360738..23368089WRKY DNA binding domain containing protein, expressed
LOC_Os04g39580OsAffx.14207.1.S1_at11/114+23377363..23377743hypothetical protein
LOC_Os04g39590OsAffx.14208.1.S1_at11/114+23378994..23380162Fasciclin domain containing protein
LOC_Os04g39600Os.5963.1.S1_at11/114+23380441..23381606Fasciclin domain containing protein, expressed
LOC_Os04g39610NANA4+23387527..23391924glycerophosphoryl diester phosphodiesterase 1 precursor, putative, expressed
LOC_Os04g39629Os.18684.1.S1_at11/114+23397289..23404774RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14208.1.S1_at--689--4211Chr04:23379511..23379870 (25 bp)
CCGCCATCGAGCCATCGGTGTTGGC
LOC_Os04g39590
OsAffx.14208.1.S1_at--183--8191Chr04:23379475..23379499 (25 bp)
GGAACCAGCTGAAGCACCTGCTGAT
LOC_Os04g39590
OsAffx.14208.1.S1_at--553--3391Chr04:23379470..23379494 (25 bp)
CAGCTGAAGCACCTGCTGATGTACC
LOC_Os04g39590
OsAffx.14208.1.S1_at--843--8471Chr04:23379439..23379463 (25 bp)
TGGCGAAGCACTACACGCTGGCGGA
LOC_Os04g39590
OsAffx.14208.1.S1_at--379--1231Chr04:23379415..23379439 (25 bp)
AGTTCGACGGGCTGAGCCAGAGCAA
LOC_Os04g39590
OsAffx.14208.1.S1_at--56--3871Chr04:23379404..23379428 (25 bp)
CTGAGCCAGAGCAACCCGGTGAAGA
LOC_Os04g39590
OsAffx.14208.1.S1_at--336--1491Chr04:23379395..23379419 (25 bp)
AGCAACCCGGTGAAGACGCTCGCCG
LOC_Os04g39590
OsAffx.14208.1.S1_at--437--7271Chr04:23379329..23379353 (25 bp)
GTCCACGTGATGTCGAGGTGGTCCA
LOC_Os04g39590
OsAffx.14208.1.S1_at--317--771Chr04:23379320..23379344 (25 bp)
ATGTCGAGGTGGTCCAGCGCCAGGG
LOC_Os04g39590
OsAffx.14208.1.S1_at--221--8031Chr04:23379289..23379313 (25 bp)
GGAGCGTGTACGAGTCGGCGGCCAT
LOC_Os04g39590
OsAffx.14208.1.S1_at--1058--8511Chr04:23379250..23379274 (25 bp)
TGGACACGGTGCTGCTCCCGGACGC
LOC_Os04g39590
Target Sequence 
CCGCCATCGAGCCATCGGTGTTGGCGGGGCTATCGAGGAACCAGCTGAAGCACCTGCTGATGTACCACTCGCTGGCGAAG
CACTACACGCTGGCGGAGTTCGACGGGCTGAGCCAGAGCAACCCGGTGAAGACGCTCGCCGGCGGGAGGTACGCGGTGAA
CGTGACGTACGACGGCGGCGTGGTCCACGTGATGTCGAGGTGGTCCAGCGCCAGGGTGGTCGGGAGCGTGTACGAGTCGG
CGGCCATGGCGGTGTACGAGCTGGACACGGTGCTGCTCCCGGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis