Browse Element(s) Details


OsAffx.14265.1.S1_at

Description tigr:9632.m04266
TID=OsAffx.14265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4445011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44420OsAffx.26459.1.S1_at11/114+26077083..26077556isochorismatase family protein, expressed
LOC_Os04g44430Os.25524.1.S1_at11/114+26081183..26088576transporter, putative, expressed
LOC_Os04g44440Os.52097.1.S1_at11/114+26091520..26092590TCP family transcription factor containing protein, expressed
LOC_Os04g44450OsAffx.14265.1.S1_at11/114+26098419..26099927hypothetical protein
LOC_Os04g44460OsAffx.26460.1.S1_at11/114+26101366..26102406Sulfotransferase domain containing protein, expressed
LOC_Os04g44470Os.5324.1.S1_at11/114+26104765..26105721Alpha-amylase/subtilisin inhibitor, putative, expressed
LOC_Os04g44480NANA4+26107320..26113457retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_x_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.1.S1_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.3.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.5.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44500Os.12986.1.S1_at11/114+26123360..26124697GRAM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14265.1.S1_at--175--1071Chr04:26098892..26098916 (25 bp)
AGGGCTCAGAGCCTCAGATGCTGAT
LOC_Os04g44450
OsAffx.14265.1.S1_at--142--1431Chr04:26098941..26098965 (25 bp)
AGAAGGGTATCTCTGGTCGTCCCCG
LOC_Os04g44450
OsAffx.14265.1.S1_at--102--511Chr04:26099024..26099048 (25 bp)
ATCGTGCGAAGAGCATCCTTGGTCC
LOC_Os04g44450
OsAffx.14265.1.S1_at--1139--10091Chr04:26099098..26099122 (25 bp)
TAGGCGCATGGCTGAACTTGGAGTT
LOC_Os04g44450
OsAffx.14265.1.S1_at--842--6051Chr04:26099118..26099142 (25 bp)
GAGTTGGCTATGTGCATCCTTTGCA
LOC_Os04g44450
OsAffx.14265.1.S1_at--734--1831Chr04:26099676..26099700 (25 bp)
ACGCGGTTAGCGTTTGGAGGCCCAT
LOC_Os04g44450
OsAffx.14265.1.S1_at--338--8011Chr04:26099691..26099715 (25 bp)
GGAGGCCCATCAGACGTTCAGACGA
LOC_Os04g44450
OsAffx.14265.1.S1_at--776--1391Chr04:26099710..26099734 (25 bp)
AGACGATCATTGCATGCGCGGGCTC
LOC_Os04g44450
OsAffx.14265.1.S1_at--60--5251Chr04:26099772..26099796 (25 bp)
GAATCGGCGAGTTGCACTGATGCGT
LOC_Os04g44450
OsAffx.14265.1.S1_at--417--1971Chr04:26099787..26099811 (25 bp)
ACTGATGCGTTTCTGCTACGTACTG
LOC_Os04g44450
OsAffx.14265.1.S1_at--965--9931Chr04:26099803..26099827 (25 bp)
TACGTACTGGTTTTCTGATGCTCAA
LOC_Os04g44450
Target Sequence 
AGGGCTCAGAGCCTCAGATGCTGATCGATATGATTCCCATGGAATGGTCAGAAGGGTATCTCTGGTCGTCCCCGGGCCTG
CTGATATCAGTGGACATAGAAGGGGCTCAGATGCTGATTGTAATTCCCATGGATCGTGCGAAGAGCATCCTTGGTCCTCG
GCCTGCAGATGTGAGGCTTTAGAGTTTACTGATGAATACTTAGGCATAGGCGCATGGCTGAACTTGGAGTTGGCTATGTG
CATCCTTTGCATATATGCCGGGTATTTAGGTGTTTCCGTCGCCCTTGGTCCGTCTGTCACGCGGTTAGCGTTTGGAGGCC
CATCAGACGTTCAGACGATCATTGCATGCGCGGGCTCCTCTACGCCGAGGGTTTTGGATGTCTTTGGTGGTGTAGAATCG
GCGAGTTGCACTGATGCGTTTCTGCTACGTACTGGTTTTCTGATGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis