Browse Element(s) Details


OsAffx.14266.1.S1_at

Description tigr:9632.m04273
TID=OsAffx.14266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4452011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44480NANA4+26107320..26113457retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_x_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.1.S1_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.3.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.5.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44500Os.12986.1.S1_at11/114+26123360..26124697GRAM domain containing protein, expressed
LOC_Os04g44510Os.7622.1.S1_at11/114+26128239..26129416GRAM domain-containing protein, putative, expressed
LOC_Os04g44520OsAffx.14266.1.S1_at11/114+26132105..26133160hypothetical protein
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14266.1.S1_at--1038--2751Chr04:26132150..26132174 (25 bp)
AAGACTAGTGGTTTTGGAGCGGATA
LOC_Os04g44520
OsAffx.14266.1.S1_at--393--6491Chr04:26132171..26132192 (22 bp)
GATATGGACAGGCAGCAAGGTACAA
LOC_Os04g44520
OsAffx.14266.1.S1_at--170--5651Chr04:26132177..26132651 (25 bp)
GACAGGCAGCAAGGTACAAGTATAA
LOC_Os04g44520
OsAffx.14266.1.S1_at--906--2391Chr04:26132658..26132682 (25 bp)
AAACATATGATCTTGGCATTAGCTC
LOC_Os04g44520
OsAffx.14266.1.S1_at--54--8851Chr04:26132665..26132689 (25 bp)
TGATCTTGGCATTAGCTCAACGCAA
LOC_Os04g44520
OsAffx.14266.1.S1_at--591--3611Chr04:26132669..26132693 (25 bp)
CTTGGCATTAGCTCAACGCAAATTG
LOC_Os04g44520
OsAffx.14266.1.S1_at--982--2591Chr04:26132683..26132707 (25 bp)
AACGCAAATTGATACATGCCATGAT
LOC_Os04g44520
OsAffx.14266.1.S1_at--152--2111Chr04:26132696..26132720 (25 bp)
ACATGCCATGATACAATCACACGAT
LOC_Os04g44520
OsAffx.14266.1.S1_at--901--371Chr04:26132711..26132735 (25 bp)
ATCACACGATTTCCTATTCGGACGG
LOC_Os04g44520
OsAffx.14266.1.S1_at--650--3691Chr04:26132724..26132748 (25 bp)
CTATTCGGACGGTTGTGGCATGCTA
LOC_Os04g44520
OsAffx.14266.1.S1_at--53--5751Chr04:26132731..26132755 (25 bp)
GACGGTTGTGGCATGCTATATAGAA
LOC_Os04g44520
Target Sequence 
AAGACTAGTGGTTTTGGAGCGGATATGGACAGGCAGCAAGGTACAAGTATAAGGATGAAAACATATGATCTTGGCATTAG
CTCAACGCAAATTGATACATGCCATGATACAATCACACGATTTCCTATTCGGACGGTTGTGGCATGCTATATAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis