Browse Element(s) Details


OsAffx.14302.1.S1_at

Description tigr:9632.m04487
TID=OsAffx.14302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4655011/11hypothetical protein
LOC_Os10g356501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46490Os.53049.1.S1_at11/114+27356566..27357899Major intrinsic protein, expressed
LOC_Os04g46500NANA4+27363235..27365489retrotransposon protein, putative, unclassified
LOC_Os04g46510NANA4+27366326..27369025retrotransposon protein, putative, unclassified
LOC_Os04g46520NANA4+27369647..27371087retrotransposon protein, putative, unclassified
LOC_Os04g46530Os.10263.1.S1_at1/114+27373144..27377055Major intrinsic protein, expressed
LOC_Os04g46540OsAffx.14301.1.S1_at11/114+27377842..27378513hypothetical protein
LOC_Os04g46550OsAffx.14302.1.S1_at11/114+27380324..27381041hypothetical protein
LOC_Os04g46560Os.23248.1.A1_at11/114+27386071..27389250Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os04g46570Os.11799.1.S1_a_at11/114+27389328..27393393growth regulator like protein, putative, expressed
LOC_Os04g46580Os.52683.1.S1_at9/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46580OsAffx.2442.1.S1_x_at1/114+27395681..27398906SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14302.1.S1_at--342--431Chr04:27380943..27380967 (25 bp)
ATCTTCTCTGAGTATAATAGTAAGT
LOC_Os04g46550
OsAffx.14302.1.S1_at--192--5472Chr10:18738051..18738260 (25 bp)
GAACATTTGAACATTAGGAAGAGCA
LOC_Os10g35650
OsAffx.14302.1.S1_at--880--8192Chr08:19231354..19231696 (25 bp)
GGAAGTGTCAAAATACCATGCCCAT
NONE
OsAffx.14302.1.S1_at--1025--9972Chr08:19231341..19231364 (24 bp)
TACCATGCCCATTCACAAGAAGTTC
NONE
OsAffx.14302.1.S1_at--203--5353Chr10:15619794..15619979 (25 bp)
GAAGTTCACAGATAACAACATTCAT
NONE
OsAffx.14302.1.S1_at--491--2512Chr08:19231307..19231331 (25 bp)
AACATTCATATTCACAGAGCTGCTC
NONE
OsAffx.14302.1.S1_at--1015--10512Chr08:19231249..19231321 (25 bp)
TTCACAGAGCTGCTCACAGGACAGA
NONE
OsAffx.14302.1.S1_at--467--2472Chr08:19231220..19231244 (25 bp)
AACACAGATAACTTGCTAGGACAGC
NONE
OsAffx.14302.1.S1_at--919--9811Chr04:27380378..27380402 (25 bp)
TAACTTGCTAGGACAGCAGCAACAG
LOC_Os04g46550
OsAffx.14302.1.S1_at--1137--1511Chr04:27380364..27380388 (25 bp)
AGCAGCAACAGATTCCTGTCAACAT
LOC_Os04g46550
OsAffx.14302.1.S1_at--699--3271Chr04:27380359..27380383 (25 bp)
CAACAGATTCCTGTCAACATCTTCA
LOC_Os04g46550
Target Sequence 
ATCTTCTCTGAGTATAATAGTAAGTTGCAAAGAACATTTGAACATTAGGAAGAGCAAGGAGAAGAAGGCTGGAAGTGGAA
GTAAGGATACAAATAAACGGAAGTGTCAAAATACCATGCCCATTCACAAGAAGTTCACAGATAACAACATTCATATTCAC
AGAGCTGCTCACAGGACAGATAATAACACAGATAACTTGCTAGGACAGCAGCAACAGATTCCTGTCAACATCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis