Browse Element(s) Details


OsAffx.14303.1.S1_x_at

Description tigr:9632.m04523
TID=OsAffx.14303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BeigeBEACH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4690010/11Beige/BEACH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46870OsAffx.26494.1.S1_at11/114+27552933..27554218hypothetical protein
LOC_Os04g46880Os.17299.1.S1_at10/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46880Os.6231.1.S1_at1/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46890Os.5991.1.S1_at11/114+27572799..27576762snoRNA binding domain containing protein, putative, expressed
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed
LOC_Os04g46930Os.51608.1.S1_at11/114+27604719..27607399Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14303.1.S1_x_at--1140--7111Chr04:27577997..27578021 (25 bp)
GTCAGGTGTTCTTCTACATTCTTTG
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--404--9871Chr04:27577983..27578007 (25 bp)
TACATTCTTTGAGGACTGGTCGTCT
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--361--2111Chr04:27577931..27577955 (25 bp)
ACATGCTGTATGCTTATCTTCTCAA
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--325--131Chr04:27577862..27577886 (25 bp)
ATTCACTGTCAATGGACTCCCTATT
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--927--10211Chr04:27577841..27577865 (25 bp)
TATTGCTACCACAGTTCTATCACCT
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--80--6051Chr04:27577792..27577816 (25 bp)
GAGATTTCTACTGATGGCCATTTCG
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--690--3191Chr04:27577648..27577672 (25 bp)
CAATCTGTTCATGTGCCTTCTGTAT
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--403--4451Chr04:27577634..27577658 (25 bp)
GCCTTCTGTATGCTTTGTTGATCTG
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--132--971Chr04:27577486..27577510 (25 bp)
AGGACGTCACAGCAATCGCTCTAAA
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--963--3291Chr04:27577450..27577474 (25 bp)
CAAATCTTCTACTGTCTACTGCTGA
LOC_Os04g46900
OsAffx.14303.1.S1_x_at--150--291NONE
ATAGTGTTCACTGATCCTGCTTTGA
NONE
Target Sequence 
GTCAGGTGTTCTTCTACATTCTTTGAGGACTGGTCGTCTGATAAGGAAGCTTAATGTAGCGGAGGCACATGCTGTATGCT
TATCTTCTCAAGGGGTCATTCTGGTTTGGAATGAATCAAAGAAAAGACTATCTACATTCACTGTCAATGGACTCCCTATT
GCTACCACAGTTCTATCACCTTTTTGTGGACGGGTTAGTTGCATTGAGATTTCTACTGATGGCCATTTCGCCTTAATGGG
AACATGTTCTTCAAGCAATTATAAGTGTGAGGACAGTACTGAGACTGGGGATCATGAACCTAATGAACCAAATGGCAAGG
ATGGCATATCTAAACAAGCTGAAACTAGGCAATCTGTTCATGTGCCTTCTGTATGCTTTGTTGATCTGCATAAACTTAAG
GTATTTCATACAATGGAGCTGGGGAAAGGCCAGGACGTCACAGCAATCGCTCTAAACAAAGAGAACACAAATCTTCTACT
GTCTACTGCTGATAAGCAGCTAATAGTGTTCACTGATCCTGCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14303.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis