Browse Element(s) Details


OsAffx.14311.1.S1_s_at

Description tigr:9632.m04567
TID=OsAffx.14311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4730011/11Calcium-dependent protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47240Os.11767.1.S1_s_at11/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47240Os.11767.1.S1_at10/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47250Os.8021.1.S1_x_at10/114+27842337..27844542Cytochrome P450 86A2, putative, expressed
LOC_Os04g47260OsAffx.14310.1.S1_s_at11/114+27845921..27847884expressed protein
LOC_Os04g47270Os.53652.1.S1_at10/114+27848037..27851280amine oxidase family protein, putative, expressed
LOC_Os04g47280Os.419.2.S1_at11/114+27852512..27855504glycosyl hydrolase family 29, putative, expressed
LOC_Os04g47290OsAffx.4110.1.S1_at11/114+27856467..27860700expressed protein
LOC_Os04g47300OsAffx.14311.1.S1_s_at11/114+27860417..27863201Calcium-dependent protein kinase, putative, expressed
LOC_Os04g47310Os.11940.1.S1_at11/114+27865144..27866751expressed protein
LOC_Os04g47320OsAffx.26499.1.S1_at11/114+27872062..27875526Mechanosensitive ion channel family protein, expressed
LOC_Os04g47330Os.55318.1.S1_at11/114+27877256..27878536Rho-GTPase-activating protein, putative, expressed
LOC_Os04g47350NANA4+27886625..27888644retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14311.1.S1_s_at--721--7531Chr04:27861350..27861374 (25 bp)
GTGGCACAATCACGGTTGAAGAACT
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--747--7911Chr04:27861322..27861346 (25 bp)
GGTTGGTCTGACAAAGCTAGGATCA
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--791--4891Chr04:27861192..27861295 (25 bp)
GCTTATGGAAGCAGTTGACGTAGAC
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--709--8931Chr04:27861177..27861201 (25 bp)
TGACGTAGACAAGAGTGGCAGCATT
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--179--4951Chr04:27861157..27861181 (25 bp)
GCATTGATTACTCGGAGTTCCTCAC
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--56--9451Chr04:27861146..27861170 (25 bp)
TCGGAGTTCCTCACAGCTATGATAA
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--1085--8011Chr04:27861099..27861123 (25 bp)
GGAGGATTTACTTCGTGCATTTCAA
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--322--2211Chr04:27860803..27860827 (25 bp)
ACAAGCCATGGCAGAGTACGGAATG
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--557--2371Chr04:27860593..27860617 (25 bp)
AAACCTGAGGAAACTCTCTGGTCTC
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--247--2551Chr04:27860582..27860606 (25 bp)
AACTCTCTGGTCTCTTTGTGAATAA
LOC_Os04g47300
OsAffx.14311.1.S1_s_at--534--10731Chr04:27860488..27860512 (25 bp)
TTGCTTTGGCTGTTGTGGTTTGATC
LOC_Os04g47300
Target Sequence 
GTGGCACAATCACGGTTGAAGAACTGAAGGTTGGTCTGACAAAGCTAGGATCAAGAATTAGTGAAGCCGAGGTTCAGAAG
CTTATGGAAGCAGTTGACGTAGACAAGAGTGGCAGCATTGATTACTCGGAGTTCCTCACAGCTATGATAAATAAGCATAA
ACTGGAAAAGGAGGAGGATTTACTTCGTGCATTTCAACATTTTGACAAAGATAACAGCGGGTACATAACAAGAGATGAAC
TGGAACAAGCCATGGCAGAGTACGGAATGGGTGATGAAGCAAACATTAAACAAGTACTGGATGAAGTTGACAAAGACAAG
GACGGGAGAATTGACTATGAAGAGTTTGTGGAAATGATGAGGAAAGGAATACAAACCTGAGGAAACTCTCTGGTCTCTTT
GTGAATAAATTTGTATAGACATGTTCGAGTATATGCTGCAAGCAGATGAAACGCAAAAAAGTTAACCCCAAAAGCAGTTG
CTTTGGCTGTTGTGGTTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14311.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis