Browse Element(s) Details


OsAffx.14316.1.S1_at

Description tigr:9632.m04595
TID=OsAffx.14316.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GCN2 homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4757010/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47530OsAffx.4115.1.S1_at11/114+27973372..27976315expressed protein
LOC_Os04g47550Os.24756.1.S1_at11/114+27978515..27981013expressed protein
LOC_Os04g47550Os.24756.2.S1_x_at11/114+27978515..27981013expressed protein
LOC_Os04g47560NANA4+27985496..27991883retrotransposon protein, putative, unclassified
LOC_Os04g47570OsAffx.14316.1.S1_at10/114+27994114..27999115Protein kinase domain containing protein
LOC_Os04g47570OsAffx.15844.1.S1_at1/114+27994114..27999115Protein kinase domain containing protein
LOC_Os04g47580Os.9246.1.S1_at11/114+27999622..28002577G2/mitotic-specific cyclin 2, putative, expressed
LOC_Os04g47590Os.28054.1.S1_at11/114+28005406..28021730Niemann-Pick C type protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14316.1.S1_at--965--5951Chr04:27997492..27997516 (25 bp)
GAGAATGATCAATCCTGTTCCACCG
LOC_Os04g47570
OsAffx.14316.1.S1_at--741--3871Chr04:27997478..27997502 (25 bp)
CTGTTCCACCGAAGATGATCTGTCA
LOC_Os04g47570
OsAffx.14316.1.S1_at--458--2971NONE
AATGGAGCATTGTCTCAGGACCCTT
NONE
OsAffx.14316.1.S1_at--637--8091Chr04:27994946..27994970 (25 bp)
GGACCCTTAGGAATGATCTTCGTTT
LOC_Os04g47570
OsAffx.14316.1.S1_at--793--6391Chr04:27994932..27994956 (25 bp)
GATCTTCGTTTTGGACCACGTGAAA
LOC_Os04g47570
OsAffx.14316.1.S1_at--991--5891Chr04:27994865..27994889 (25 bp)
GAGCTGTCCAGTGTATTCACCATGA
LOC_Os04g47570
OsAffx.14316.1.S1_at--28--9231Chr04:27994717..27994741 (25 bp)
TCCAGACCGTGGTACTCCAATGTAT
LOC_Os04g47570
OsAffx.14316.1.S1_at--231--10191Chr04:27994282..27994306 (25 bp)
TATATTTTTCGAGTTGTTCTACCCT
LOC_Os04g47570
OsAffx.14316.1.S1_at--505--5371Chr04:27994267..27994291 (25 bp)
GTTCTACCCTTTCAAAACTGGACAT
LOC_Os04g47570
OsAffx.14316.1.S1_at--1074--5511Chr04:27994214..27994238 (25 bp)
GAAAAGGTATACATCCAGCGGACTG
LOC_Os04g47570
OsAffx.14316.1.S1_at--324--3171Chr04:27994157..27994181 (25 bp)
AATTGACAGCTCTAATTCCTTCCAA
LOC_Os04g47570
Target Sequence 
GAGAATGATCAATCCTGTTCCACCGAAGATGATCTGTCAAGTTCCAGTGAGGATAAATATGTGATCATTCTAATGGAGCA
TTGTCTCAGGACCCTTAGGAATGATCTTCGTTTTGGACCACGTGAAATAAATACAGAAGAGTCATGGATGCTTTTTGAAG
AAATAACAAGAGCTGTCCAGTGTATTCACCATGAGGGCATTGTACATAGGGACTTAAAGCCAAGCAATATTTTCTTTGGA
TCAAATGGTTTAGTGAAAATCGCTGATTTTGGCCATGCTTGTTGGGCAACAAATAAGATTGATGAATTGAAAGGAACTCC
AGACCGTGGTACTCCAATGTATAGTGCCCCCGAGCTGAAGGAAGGACAACATGTTACTGAAAAGACTGACATATTCAGTA
TAGGTGTTATATTTTTCGAGTTGTTCTACCCTTTCAAAACTGGACATGAGCAACGTGATGTTTTGACAAACTTGAGAAAA
GGTATACATCCAGCGGACTGGAAGTGGAGTGGTGACAGTGTACTGCTGAAGAAATTGACAGCTCTAATTCCTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis