Browse Element(s) Details


OsAffx.14337.2.A1_at

Description tigr:9632.m04772
TID=OsAffx.14337.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g491804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49150Os.2352.1.S1_a_at11/114+29089153..29095022Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os04g49160Os.27330.1.A1_at11/114+29098117..29099361Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49170OsAffx.4126.1.S1_at11/114+29104906..29105424Zinc finger, C3HC4 type family protein
LOC_Os04g49180OsAffx.14337.2.A1_at4/114+29106794..29107138hypothetical protein
LOC_Os04g49194Os.17316.1.S1_at11/114+29112473..29119170oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49210Os.7095.1.S1_at3/114+29120377..29122074oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49220OsAffx.10905.1.S1_at11/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49220Os.13772.1.S1_at9/114+29129690..29135033Tim10/DDP family zinc finger containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14337.2.A1_at--564--4691Chr04:29106541..29106565 (25 bp)
GCTGGCACCCTGCACGGAACAACAA
NONE
OsAffx.14337.2.A1_at--395--2371Chr04:29106567..29106591 (25 bp)
AAACCGGATCGAATCAGATCGAGCG
NONE
OsAffx.14337.2.A1_at--54--7531Chr04:29106638..29106662 (25 bp)
GTGGAAGCAAACACTTATGACGTTG
NONE
OsAffx.14337.2.A1_at--726--2471Chr04:29106647..29106671 (25 bp)
AACACTTATGACGTTGCCAAGCGCG
NONE
OsAffx.14337.2.A1_at--585--10431Chr04:29106652..29106676 (25 bp)
TTATGACGTTGCCAAGCGCGACGGC
NONE
OsAffx.14337.2.A1_at--1103--5891Chr04:29106775..29106799 (25 bp)
GAGCTCGTCCATGGCCTCAATGGCT
NONE
OsAffx.14337.2.A1_at--748--9231Chr04:29106782..29106806 (25 bp)
TCCATGGCCTCAATGGCTGACGACG
NONE
OsAffx.14337.2.A1_at--466--4591Chr04:29106816..29106840 (25 bp)
GCGACAATGCCGAGGCGGAACAAGT
LOC_Os04g49180
OsAffx.14337.2.A1_at--680--8871Chr04:29106873..29106897 (25 bp)
TGATGGGATTCGTACCGGCGGGCAC
LOC_Os04g49180
OsAffx.14337.2.A1_at--215--8451Chr04:29107006..29107030 (25 bp)
GGCCACCCCGAGCAGAGAGCGACAA
LOC_Os04g49180
OsAffx.14337.2.A1_at--364--2791Chr04:29107066..29107090 (25 bp)
AAGAGATTGGGTGACGTGGCCAGCT
LOC_Os04g49180
Target Sequence 
GCTGGCACCCTGCACGGAACAACAACAAACCGGATCGAATCAGATCGAGCGGAGGAGGAGGAGGAGCTGCCGTAGCGGCG
AGGAGGCAACGGCTCCAGTGGAAGCAAACACTTATGACGTTGCCAAGCGCGACGGCGTTGAGGAAGGTGGAGGGGCGGCG
CGGCTGGACTCGTCGGAGGGGTCGTCGTCACCCAGGAGGGAGGCGGCCTGGCGCATGGACTCGGCGAGCTGGATGAGCTC
GTCCATGGCCTCAATGGCTGACGACGACATGGGTGGCGACAATGCCGAGGCGGAACAAGTGTGGCCCGTGGGAGGAGGAC
ATGGCGGCGCGGTGATGGGATTCGTACCGGCGGGCACCGCTGTCGATGCCCTCCTCCTCCTCCTCGTCCGGGCCCGCCGC
CGCGTTGCCCGCCTGCGCCCGGGCTGCCGCCGCTGCGTCGCCACGCCACCCCGCCGCCCGTCGCTGGCCACCCCGAGCAG
AGAGCGACAAGAAGGAAGGAGAGGAATAGAGAAAAAGAAAGAGGAAAGAGATTGGGTGACGTGGCCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14337.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis