Browse Element(s) Details


OsAffx.14340.1.S1_at

Description tigr:9632.m04782
TID=OsAffx.14340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4928011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49250Os.54071.1.S1_at11/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49250OsAffx.17756.1.S1_x_at1/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49260Os.55252.1.S1_at8/114+29189821..29190528copper-binding protein, putative, expressed
LOC_Os04g49270OsAffx.14339.1.S1_at11/114+29193644..29197750hypothetical protein
LOC_Os04g49280OsAffx.14340.1.S1_at11/114+29198531..29199912hypothetical protein
LOC_Os04g49290OsAffx.21085.1.S1_at8/114+29200004..29204367retrotransposon protein, putative, unclassified, expressed
LOC_Os04g49300NANA4+29204866..29209420retrotransposon protein, putative, LINE subclass
LOC_Os04g49310Os.54676.1.S1_at11/114+29211921..29215294expressed protein
LOC_Os04g49320Os.24691.1.A1_s_at11/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49320Os.27955.2.S1_at1/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14340.1.S1_at--996--9451Chr04:29199209..29199233 (25 bp)
TCGGCCACGGTGACTCTTGATGAGA
LOC_Os04g49280
OsAffx.14340.1.S1_at--1051--9571Chr04:29199223..29199247 (25 bp)
TCTTGATGAGAACGCGGCTGTCACC
LOC_Os04g49280
OsAffx.14340.1.S1_at--320--4491Chr04:29199304..29199328 (25 bp)
GCCGGAGCGTGTGTTCCCGCAGTTC
LOC_Os04g49280
OsAffx.14340.1.S1_at--69--1891Chr04:29199453..29199477 (25 bp)
ACGTCAACCGTCGTGGTCGTGATGA
LOC_Os04g49280
OsAffx.14340.1.S1_at--1090--8851Chr04:29199472..29199496 (25 bp)
TGATGACGACACACGCGACAGGTTC
LOC_Os04g49280
OsAffx.14340.1.S1_at--159--1011Chr04:29199522..29199546 (25 bp)
AGGATAGTCGGCGTCATTACAATGA
LOC_Os04g49280
OsAffx.14340.1.S1_at--1131--111Chr04:29199537..29199561 (25 bp)
ATTACAATGACGACCACCCCGACTT
LOC_Os04g49280
OsAffx.14340.1.S1_at--464--8995Chr07:11078945..11079106 (25 bp)
TGAAGCCCGGCGAGAGAACGTGATC
NONE
OsAffx.14340.1.S1_at--1087--5455Chr07:11079097..11079121 (25 bp)
GAACGTGATCGACGTGATCCGCATT
NONE
OsAffx.14340.1.S1_at--626--4555Chr07:11079148..11079172 (25 bp)
GCGCCATCGCACACGATCGGATCGT
NONE
OsAffx.14340.1.S1_at--602--9875Chr07:11079189..11079213 (25 bp)
TACATTACTGCCACGCCGTGAACAT
NONE
Target Sequence 
TCGGCCACGGTGACTCTTGATGAGAACGCGGCTGTCACCCCGGCGAAGCGTCGTCTTCCACCGTGGCACCTTGGGGTGGC
CGATGGTGAACCGGCGCCGGAGCGTGTGTTCCCGCAGTTCCCTCACCACCCGCCGCCGCCGCAAGGCCTCTTCCACCCCG
GAGCTGGTCGCGATGAGGGCGGCAAGATGGAGAAGGACCGTGGCAGCCGCAACAGGGGAGACCGGCGTAACGTCGACCGG
CGCGACGTCAACCGTCGTGGTCGTGATGACGACACACGCGACAGGTTCGGCCGCGAGAGGGACGGCCGCGACAAGGATAG
TCGGCGTCATTACAATGACGACCACCCCGACTTCGATCGGGGACTCGGCTGGCGTCGCCGAGATGACGATGAAGCCCGGC
GAGAGAACGTGATCGACGTGATCCGCATTGCCCGCCACACGACCCAGTGCGTCGTGCGCCATCGCACACGATCGGATCGT
GCAGTGGGCGACTCGCTACATTACTGCCACGCCGTGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis