Browse Element(s) Details


OsAffx.14344.1.S1_at

Description tigr:9632.m04802
TID=OsAffx.14344.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=lectin precursor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4948011/11Legume lectins beta domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49420NANA4+29269861..29270469Histone H4, putative, expressed
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g49460Os.54481.2.S1_at8/114+29288564..29289733Protein kinase domain containing protein, expressed
LOC_Os04g49480OsAffx.14344.1.S1_at11/114+29294790..29295632Legume lectins beta domain containing protein
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed
LOC_Os04g49510Os.282.2.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49510Os.282.1.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49520Os.55596.1.S1_at10/114+29316733..29319450PPR868-14, putative, expressed
LOC_Os04g49530Os.47740.1.S1_at11/114+29319648..29323458expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14344.1.S1_at--273--5971Chr04:29295351..29295375 (25 bp)
GAGAACAGTAGCATCCTTCAGGACA
LOC_Os04g49480
OsAffx.14344.1.S1_at--969--5431Chr04:29295291..29295315 (25 bp)
GAACGAGACCGGTGAAGGCCTAGCC
LOC_Os04g49480
OsAffx.14344.1.S1_at--22--3711Chr04:29295138..29295162 (25 bp)
CTACGACGAGGATCTTGACAGCAAC
LOC_Os04g49480
OsAffx.14344.1.S1_at--948--8271Chr04:29295092..29295116 (25 bp)
GGCATCAGATCCGTCGTGCAGTATC
LOC_Os04g49480
OsAffx.14344.1.S1_at--492--7331Chr04:29295077..29295101 (25 bp)
GTGCAGTATCCACTCAGTAACGTTT
LOC_Os04g49480
OsAffx.14344.1.S1_at--695--6831Chr04:29295056..29295080 (25 bp)
GTTTCTATCTTCCTCTCGAGTGGTT
LOC_Os04g49480
OsAffx.14344.1.S1_at--624--7871Chr04:29295035..29295059 (25 bp)
GGTTTCGATTTGTTCGTCAGTATCA
LOC_Os04g49480
OsAffx.14344.1.S1_at--846--9631Chr04:29294937..29294961 (25 bp)
TCAGGCTTGGCCCATTGATCTATCA
LOC_Os04g49480
OsAffx.14344.1.S1_at--332--8851Chr04:29294922..29294946 (25 bp)
TGATCTATCACGCTATCTTTCGGAG
LOC_Os04g49480
OsAffx.14344.1.S1_at--318--10871Chr04:29294835..29294859 (25 bp)
TTGGAAGTTCATCACGGCTGGCGAC
LOC_Os04g49480
OsAffx.14344.1.S1_at--369--1931Chr04:29294822..29294846 (25 bp)
ACGGCTGGCGACTTCGACAGTAAGG
LOC_Os04g49480
Target Sequence 
GAGAACAGTAGCATCCTTCAGGACAGAGTTTGTGCTGAACATCCTCCCAAACCAGCAGCAGAACGAGACCGGTGAAGGCC
TAGCCTTCATCCTCACCAGCAACCTCTCGTCGCCTCGCGGCAGCAGCGGCCAGTGGCTCGGCATCGCCAACGAGCAGACT
GACGGGTCGCCGGCAAACCGGATTGTGGCCGTGGAATTCGACACGAGGAAGAGCTACGACGAGGATCTTGACAGCAACCA
TGTCGGGCTCGACGTCAACGGCATCAGATCCGTCGTGCAGTATCCACTCAGTAACGTTTCTATCTTCCTCTCGAGTGGTT
TCGATTTGTTCGTCAGTATCAGCTACAAAAGCAGGTTTCGATTGTTGATAGTAGAAGCGATGCAGTTGAGTACCAGAGGG
CTGCATGTTGTTGTTCAGGCTTGGCCCATTGATCTATCACGCTATCTTTCGGAGGAGATATATGTGGGGTTTGCGGGTTC
AACCGGGGAATTCACTGAACTGAACCAGATCAAATCTTGGAAGTTCATCACGGCTGGCGACTTCGACAGTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis