Browse Element(s) Details


OsAffx.1436.1.S1_x_at

Description gb:NM_186877.1
DB_XREF= gi:34900839
TID=OsAffx.1436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0458G06.2 (P0458G06.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g231002/11hypothetical protein
LOC_Os06g335492/11Protein phosphatase 2C containing protein, expressed
LOC_Os02g140402/11hypothetical protein
LOC_Os01g233402/11hypothetical protein
LOC_Os07g352501/11hypothetical protein
LOC_Os07g161101/11hypothetical protein
LOC_Os08g109501/11hypothetical protein
LOC_Os11g311501/11hypothetical protein
LOC_Os09g088101/11hypothetical protein
LOC_Os05g444501/11transposon protein, putative, unclassified
LOC_Os02g312591/11
LOC_Os07g319301/11hypothetical protein
LOC_Os04g100401/11hypothetical protein
LOC_Os04g010891/11
LOC_Os06g257901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g215301/11hypothetical protein
LOC_Os02g142401/11hypothetical protein
LOC_Os04g205701/11hypothetical protein
LOC_Os12g259201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23070Os.51348.1.S1_x_at2/115+13070372..13074920retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23080NANA5+13077810..13084543retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23090Os.40360.1.S1_x_at1/115+13088096..13090684hypothetical protein
LOC_Os05g23100OsAffx.1436.1.S1_x_at2/115+13091503..13091794hypothetical protein
LOC_Os05g23100OsAffx.2606.1.S1_at2/115+13091503..13091794hypothetical protein
LOC_Os05g23110Os.27691.1.S1_x_at1/115+13093803..13096959retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23110Os.27691.2.S1_x_at1/115+13093803..13096959retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23120NANA5+13103639..13106200retrotransposon protein, putative, unclassified
LOC_Os05g23130Os.18342.1.S1_at11/115+13109439..13110515expressed protein
LOC_Os05g23140NANA5+13115391..13121855retrotransposon protein, putative, LINE subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1436.1.S1_x_at--152--1155Chr12:5367397..5367421 (25 bp)
AGTCGGCGACGGCAAACGCATCCGA
NONE
OsAffx.1436.1.S1_x_at--710--5733Chr12:15037129..15037149 (21 bp)
GACGGCAAACGCATCCGACGGATGT
LOC_Os12g25920
OsAffx.1436.1.S1_x_at--190--41375Chr12:20286349..20286468 (25 bp)
CGCATCCGACGGATGTTGATGAAGA
NONE
OsAffx.1436.1.S1_x_at--822--535212Chr12:8547736..8547760 (25 bp)
GAAGATGACGATGTCGGTGATCCAG
NONE
OsAffx.1436.1.S1_x_at--553--1534Chr08:10910893..10910917 (25 bp)
AGCAGTGTAGCAGCCAATGATAATG
NONE
OsAffx.1436.1.S1_x_at--94--18523Chr12:5367589..5367610 (22 bp)
ACGCTCATCAGCGTTTGCGTAGAAA
NONE
OsAffx.1436.1.S1_x_at--98--9591Chr07:8742443..8742463 (21 bp)
TCATCAGCGTTTGCGTAGAAACGGT
NONE
OsAffx.1436.1.S1_x_at--972--9131Chr07:8742454..8742555 (25 bp)
TGCGTAGAAACGGTGGAGATGTCAA
NONE
OsAffx.1436.1.S1_x_at--309--2371Chr07:8742541..8742562 (22 bp)
AAACGGTGGAGATGTCAAGGTCGAT
NONE
OsAffx.1436.1.S1_x_at--946--93712Chr10:12097609..12097632 (24 bp)
TCGATGAAGTAGAGGTGCTGATGAT
NONE
OsAffx.1436.1.S1_x_at--610--6271Chr07:8742583..8742607 (25 bp)
GATGTCAGTGACAATGATCCATCAA
NONE
Target Sequence 
AGTCGGCGACGGCAAACGCATCCGACGGATGTTGATGAAGATGACGATGTCGGTGATCCAGTCAATAGCAGTGTAGCAGC
CAATGATAATGACGAAGACGCTCATCAGCGTTTGCGTAGAAACGGTGGAGATGTCAAGGTCGATGAAGTAGAGGTGCTGA
TGATGATGTCAGTGACAATGATCCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1436.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis