Browse Element(s) Details


OsAffx.14479.1.S1_at

Description tigr:9632.m05815
TID=OsAffx.14479.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5947011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein
LOC_Os04g59470OsAffx.14479.1.S1_at11/114+35139528..35140385No apical meristem protein, expressed
LOC_Os04g59480OsAffx.14480.1.S1_at11/114+35140985..35144392POT family protein, expressed
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59510Os.9618.1.S1_at11/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510OsAffx.14481.1.S1_at9/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510Os.28544.1.S1_at1/114+35163816..35171348PHD finger transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14479.1.S1_at--845--7451Chr04:35139893..35139917 (25 bp)
GTGTGCCGCGCGTTTCACAAGCCCA
LOC_Os04g59470
OsAffx.14479.1.S1_at--732--4831Chr04:35139805..35139829 (25 bp)
GCTACTACGACGACCAATATTTATA
LOC_Os04g59470
OsAffx.14479.1.S1_at--412--1871Chr04:35139796..35139820 (25 bp)
ACGACCAATATTTATATCCTCCTCC
LOC_Os04g59470
OsAffx.14479.1.S1_at--461--5191Chr04:35139676..35139700 (25 bp)
GCAATGATAATATTCCGCTGGTGGT
LOC_Os04g59470
OsAffx.14479.1.S1_at--889--3111Chr04:35139668..35139692 (25 bp)
AATATTCCGCTGGTGGTGAGTCCGA
LOC_Os04g59470
OsAffx.14479.1.S1_at--680--7491Chr04:35139656..35139680 (25 bp)
GTGGTGAGTCCGACTGCCGTACACA
LOC_Os04g59470
OsAffx.14479.1.S1_at--326--7251Chr04:35139649..35139673 (25 bp)
GTCCGACTGCCGTACACACACAAGG
LOC_Os04g59470
OsAffx.14479.1.S1_at--179--3351Chr04:35139624..35139648 (25 bp)
CACCGGCGGCGACATTATTAACGAC
LOC_Os04g59470
OsAffx.14479.1.S1_at--1084--5251Chr04:35139614..35139638 (25 bp)
GACATTATTAACGACGCTACTACCG
LOC_Os04g59470
OsAffx.14479.1.S1_at--630--131Chr04:35139608..35139632 (25 bp)
ATTAACGACGCTACTACCGCGCCTG
LOC_Os04g59470
OsAffx.14479.1.S1_at--1047--9111Chr04:35139570..35139594 (25 bp)
TGCTGATCATCGTCGACACCTTGCT
LOC_Os04g59470
Target Sequence 
GTGTGCCGCGCGTTTCACAAGCCCACCACCACCACCCTGCAGCATCAGCTTCACCTGCACAGGCCGGCTCCTCTACTTCA
TCATCCCGGCTACTACGACGACCAATATTTATATCCTCCTCCTGCTGCTGCTGCTGGTGGCGGCGGCTTGCTCTGCTCCC
CTGCCTTGGACATGGAGTTGGAGGACGAGGAGGATGAATCCAAGATGATGATCTTAAGCAATGATAATATTCCGCTGGTG
GTGAGTCCGACTGCCGTACACACACAAGGCACCGGCGGCGACATTATTAACGACGCTACTACCGCGCCTGCTGCTGCTGC
TGCTGCTGATCATCGTCGACACCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis