Browse Element(s) Details


OsAffx.14480.1.S1_at

Description tigr:9632.m05816
TID=OsAffx.14480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5948011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein
LOC_Os04g59470OsAffx.14479.1.S1_at11/114+35139528..35140385No apical meristem protein, expressed
LOC_Os04g59480OsAffx.14480.1.S1_at11/114+35140985..35144392POT family protein, expressed
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59510Os.9618.1.S1_at11/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510OsAffx.14481.1.S1_at9/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510Os.28544.1.S1_at1/114+35163816..35171348PHD finger transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14480.1.S1_at--328--8611Chr04:35143718..35143742 (25 bp)
TGGTGCCAATGCTGCGGCGCATGAC
LOC_Os04g59480
OsAffx.14480.1.S1_at--558--8471Chr04:35143994..35144018 (25 bp)
TGGCGCTCTACTACAGCGTCATGGG
LOC_Os04g59480
OsAffx.14480.1.S1_at--448--9531Chr04:35144000..35144024 (25 bp)
TCTACTACAGCGTCATGGGCATCGG
LOC_Os04g59480
OsAffx.14480.1.S1_at--912--2011Chr04:35144003..35144027 (25 bp)
ACTACAGCGTCATGGGCATCGGCGG
LOC_Os04g59480
OsAffx.14480.1.S1_at--590--391Chr04:35144032..35144056 (25 bp)
ATCAGCAGCGCGCTCATATCGGCGC
LOC_Os04g59480
OsAffx.14480.1.S1_at--268--251Chr04:35144047..35144071 (25 bp)
ATATCGGCGCTGGATGGCATCACCA
LOC_Os04g59480
OsAffx.14480.1.S1_at--573--9171Chr04:35144157..35144181 (25 bp)
TGCCGCGGAGCTGGCAATGTTCCTC
LOC_Os04g59480
OsAffx.14480.1.S1_at--117--8091Chr04:35144163..35144187 (25 bp)
GGAGCTGGCAATGTTCCTCTGCTTC
LOC_Os04g59480
OsAffx.14480.1.S1_at--607--3711Chr04:35144196..35144220 (25 bp)
CTACGCCTACAGAAACGCCAACAAG
LOC_Os04g59480
OsAffx.14480.1.S1_at--10--7571Chr04:35144221..35144245 (25 bp)
GGGCCCCTGCTGCTTGTTGTACCAT
LOC_Os04g59480
OsAffx.14480.1.S1_at--651--8811Chr04:35144235..35144259 (25 bp)
TGTTGTACCATCTAATACTCCGGTT
LOC_Os04g59480
Target Sequence 
TGGTGCCAATGCTGCGGCGCATGACGGGCAACCCGAGGGGGCTGACCACGCTGCAGCGCACGGGGACGGGCATGGCGCTG
TCGCTGGCGGCGGTGGCGGTGGCGGCGGCGGTGGAGGGGCGTCGGCTGGAGACGGTGCGGGAGCAACGGCCGGCGATGAG
CTGGGCGTGGCTGGTGCCGCAGTACGTGGCGATGGGGGTGGCGGACGTGCTGGCGGTGGTGGGGATGCAGGAGTTCTTCC
ACGGCGAGATGCCGGAGGGGATGCGCAGCCTGGGGCTGGCGCTCTACTACAGCGTCATGGGCATCGGCGGCTTCATCAGC
AGCGCGCTCATATCGGCGCTGGATGGCATCACCAGGAGAGACGGCGGCGACGGGTGGTTCGCCGACGATCTCAACCGAGG
CCACCTCGACTACTTCTACTGGCTGCTCGCCGGCGTCAGTGCCGCGGAGCTGGCAATGTTCCTCTGCTTCGCGCGCTCCT
ACGCCTACAGAAACGCCAACAAGGGGCCCCTGCTGCTTGTTGTACCATCTAATACTCCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis