Browse Element(s) Details


OsAffx.14481.1.S1_at

Description tigr:9632.m05818
TID=OsAffx.14481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acetyltransferase, GNAT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g595109/11PHD finger transcription factor, putative, expressed
LOC_Os08g149401/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59470OsAffx.14479.1.S1_at11/114+35139528..35140385No apical meristem protein, expressed
LOC_Os04g59480OsAffx.14480.1.S1_at11/114+35140985..35144392POT family protein, expressed
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59510Os.9618.1.S1_at11/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510OsAffx.14481.1.S1_at9/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510Os.28544.1.S1_at1/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59520Os.4621.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520Os.4621.1.S1_s_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.26668.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.30059.2.S1_x_at1/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14481.1.S1_at--1070--9751NONE
TAATCATGCCAAGGCTACTCATCCT
NONE
OsAffx.14481.1.S1_at--141--1231Chr04:35166274..35166716 (25 bp)
AGTTCCAGAGATCCAGGCCTACCAT
LOC_Os04g59510
OsAffx.14481.1.S1_at--23--6371Chr04:35166265..35166289 (25 bp)
GATCCAGGCCTACCATTTGTTGCTT
LOC_Os04g59510
OsAffx.14481.1.S1_at--754--211Chr04:35166251..35166275 (25 bp)
ATTTGTTGCTTCTGATACCCATTTG
LOC_Os04g59510
OsAffx.14481.1.S1_at--640--4911Chr04:35166244..35166268 (25 bp)
GCTTCTGATACCCATTTGATCTGGA
LOC_Os04g59510
OsAffx.14481.1.S1_at--390--6411Chr04:35166227..35166251 (25 bp)
GATCTGGAAATTAGTTGCATTGCTG
LOC_Os04g59510
OsAffx.14481.1.S1_at--103--6671Chr04:35166214..35166238 (25 bp)
GTTGCATTGCTGAAACATAAGTGGC
LOC_Os04g59510
OsAffx.14481.1.S1_at--1015--8211NONE
GGCAATCTAAATGTCCAGTACTATG
NONE
OsAffx.14481.1.S1_at--726--5491Chr04:35165177..35165201 (25 bp)
GAACATGACTGACCCTTTTCTGAGT
LOC_Os04g59510
OsAffx.14481.1.S1_at--919--5811Chr04:35165167..35165191 (25 bp)
GACCCTTTTCTGAGTGATGTTGATA
LOC_Os04g59510
OsAffx.14481.1.S1_at--898--6272Chr08:8996548..8996630 (24 bp)
GATGTTGATAGGGATTTACCTAAGC
LOC_Os08g14940
Target Sequence 
TAATCATGCCAAGGCTACTCATCCTTCCAGTTCCAGAGATCCAGGCCTACCATTTGTTGCTTCTGATACCCATTTGATCT
GGAAATTAGTTGCATTGCTGAAACATAAGTGGCAATCTAAATGTCCAGTACTATGCAATGAATTCTCCCGGATGCAATTT
ACCGGACCACAGCTCTTTTATTGCAAAACAGAAAGACATCTTCCAACTGCAGTTCATGATTCAATTCCCTCAGAGGTGCA
GCTGGTTAATGGAGCAGATAGTCATGCAAGAAATAACAAGGGATGGATAGATGGTCTCATCTATCCCTGCAATATGAAAA
ATGAATGTTTGAGATGCAATGCGAAACTGTATTTTTTTGCTTTACTGAGTGAAGCACCTGAGTCGCGATCACTTGGACAA
AAGCAGAACATGACTGACCCTTTTCTGAGTGATGTTGATAGGGATTTACCTAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis