Browse Element(s) Details


OsAffx.14536.1.S1_at

Description tigr:9633.m00347
TID=OsAffx.14536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0421011/11Cpm7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04180OsAffx.26725.1.S1_x_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180Os.16028.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180OsAffx.26725.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04190Os.16015.1.S1_a_at11/115+1867875..1873855Auxin-independent growth promoter protein, putative, expressed
LOC_Os05g04200OsAffx.26726.1.S1_at7/115+1877124..1879153hypothetical protein
LOC_Os05g04210OsAffx.14536.1.S1_at11/115+1885939..1887306Cpm7, putative
LOC_Os05g04220Os.52630.1.S1_at11/115+1902299..1905266Nitrogen regulatory protein P-II, putative, expressed
LOC_Os05g04229OsAffx.10126.1.S1_x_at1/115+1906981..1907332NA
LOC_Os05g04240OsAffx.4247.1.S1_at11/115+1910002..1911806GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14536.1.S1_at--1040--1311Chr05:1886472..1886496 (25 bp)
AGAGTGCAAAAGCACGCGAAGCAGC
LOC_Os05g04210
OsAffx.14536.1.S1_at--885--9611Chr05:1886384..1886408 (25 bp)
TCATCGAGCGGATCCAGGCCGACGC
LOC_Os05g04210
OsAffx.14536.1.S1_at--964--7371Chr05:1886220..1886244 (25 bp)
GTGAGTAGCGAAGCGTACCACCACC
LOC_Os05g04210
OsAffx.14536.1.S1_at--1079--4691Chr05:1886091..1886115 (25 bp)
GCGGCGGAGAACGACACGATCCACG
LOC_Os05g04210
OsAffx.14536.1.S1_at--430--1431Chr05:1886084..1886108 (25 bp)
AGAACGACACGATCCACGGCGACGT
LOC_Os05g04210
OsAffx.14536.1.S1_at--175--9211Chr05:1886072..1886096 (25 bp)
TCCACGGCGACGTGCTTAGCGGCAG
LOC_Os05g04210
OsAffx.14536.1.S1_at--1149--10451Chr05:1886057..1886081 (25 bp)
TTAGCGGCAGCTGGTCGGAGCTTCT
LOC_Os05g04210
OsAffx.14536.1.S1_at--85--8611Chr05:1886046..1886070 (25 bp)
TGGTCGGAGCTTCTTGCCACCACCA
LOC_Os05g04210
OsAffx.14536.1.S1_at--481--8291Chr05:1885998..1886022 (25 bp)
GGCTTGCCGGACTTCGATGAGCTCG
LOC_Os05g04210
OsAffx.14536.1.S1_at--352--8131Chr05:1885990..1886014 (25 bp)
GGACTTCGATGAGCTCGGAGATTTC
LOC_Os05g04210
OsAffx.14536.1.S1_at--1055--10291Chr05:1885969..1885993 (25 bp)
TTTCGAGGACAACTTATGGAGCCTT
LOC_Os05g04210
Target Sequence 
AGAGTGCAAAAGCACGCGAAGCAGCTGAGGTGCGACGTCAACAGCAAGGAGTTCCGCGACGTCGTCCGCCACGTCTGGAT
GCCGCGCCTCATCGAGCGGATCCAGGCCGACGCCGCCGCCGCCGGCGAAGTTGCGGCACCGGCGCCGGTGTCGGCGGCGG
CGACGAGGTCGATGAGCTCGCCGGCTGGCGCGATGTACCTCCACCACCAGCAGATTCCGCTCGCCGCCGGCGCCATGGTG
GTGGCGCCGGCGGTGAGTAGCGAAGCGTACCACCACCACGGCTGCGGCGGCGGCGGCGACACGAGCTGCAGCGAGCCGAG
CCAGGCGGCGGTGACCATGAGCCCCGACGACGCATCCAGCACGCTCCGGTCGTCGTCGGCGGCGGCGGAGAACGACACGA
TCCACGGCGACGTGCTTAGCGGCAGCTGGTCGGAGCTTCTTGCCACCACCACCACCACCATCGCCGCCACCGCCGGCTTG
CCGGACTTCGATGAGCTCGGAGATTTCGAGGACAACTTATGGAGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis