Browse Element(s) Details


OsAffx.14555.1.S1_at

Description tigr:9633.m00469
TID=OsAffx.14555.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0535411/11expressed protein
LOC_Os08g291241/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05320Os.10857.1.S1_at11/115+2596186..2602317expressed protein
LOC_Os05g05320OsAffx.27710.1.S1_at2/115+2596186..2602317expressed protein
LOC_Os05g05330Os.10713.1.S1_at7/115+2603989..2608259expressed protein
LOC_Os05g05340OsAffx.14554.1.S1_at11/115+2609570..2610612hypothetical protein
LOC_Os05g05354OsAffx.14555.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354Os.10892.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_at3/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_x_at3/115+2616872..2627073expressed protein
LOC_Os05g05354Os.16798.1.S1_at2/115+2616872..2627073expressed protein
LOC_Os05g05370OsAffx.26741.1.S1_at11/115+2630067..2634575hypothetical protein
LOC_Os05g05380OsAffx.4256.1.S1_at9/115+2643059..2644165hypothetical protein
LOC_Os05g05390OsAffx.14556.1.S1_at11/115+2650647..2657552expressed protein
LOC_Os05g05390OsAffx.26617.5.S1_x_at2/115+2650647..2657552expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14555.1.S1_at--139--1671Chr05:2620275..2620299 (25 bp)
AGCCGGCCAGCTTTATTCATCAAAG
LOC_Os05g05354
OsAffx.14555.1.S1_at--949--8431Chr05:2620271..2620295 (25 bp)
GGCCAGCTTTATTCATCAAAGATGC
LOC_Os05g05354
OsAffx.14555.1.S1_at--75--2813Chr08:17692583..17692602 (20 bp)
AAGATGCTTTCCAACCCGGGAGATT
LOC_Os08g29124
OsAffx.14555.1.S1_at--1004--6331Chr05:2620251..2620275 (25 bp)
GATGCTTTCCAACCCGGGAGATTGT
LOC_Os05g05354
OsAffx.14555.1.S1_at--778--10671Chr05:2620245..2620269 (25 bp)
TTCCAACCCGGGAGATTGTCTGCTA
LOC_Os05g05354
OsAffx.14555.1.S1_at--948--2611Chr05:2620241..2620265 (25 bp)
AACCCGGGAGATTGTCTGCTACTTT
LOC_Os05g05354
OsAffx.14555.1.S1_at--164--7651Chr05:2620236..2620260 (25 bp)
GGGAGATTGTCTGCTACTTTGTCCA
LOC_Os05g05354
OsAffx.14555.1.S1_at--1125--9071Chr05:2620225..2620249 (25 bp)
TGCTACTTTGTCCACTAGAGGCAGC
LOC_Os05g05354
OsAffx.14555.1.S1_at--598--9891Chr05:2620223..2620246 (24 bp)
TACTTTGTCCACTAGAGGCAGCAGA
LOC_Os05g05354
OsAffx.14555.1.S1_at--499--10251Chr05:2620223..2620243 (21 bp)
TTTGTCCACTAGAGGCAGCAGATGC
LOC_Os05g05354
OsAffx.14555.1.S1_at--11--6211Chr05:2619727..2620232 (25 bp)
GAGGCAGCAGATGCATTCCTCGACC
LOC_Os05g05354
Target Sequence 
AGCCGGCCAGCTTTATTCATCAAAGATGCTTTCCAACCCGGGAGATTGTCTGCTACTTTGTCCACTAGAGGCAGCAGATG
CATTCCTCGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis