Browse Element(s) Details


OsAffx.14563.1.S1_at

Description tigr:9633.m00517
TID=OsAffx.14563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0598010/11DNA directed RNA polymerase, 7 kDa subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05890Os.27691.1.S1_x_at1/115+2936678..2940565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.2.S1_x_at3/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.1.S1_x_at1/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05910NANA5+2942544..2944705retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05920OsAffx.14560.1.S1_at11/115+2945594..2946690Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os05g05930NANA5+2947630..2948211hypothetical protein
LOC_Os05g05940Os.19814.1.S1_at11/115+2948872..2950773Rubber elongation factor protein containing protein, expressed
LOC_Os05g05950Os.9224.1.S1_at11/115+2951707..2956067chloroplast outer membrane protein, putative, expressed
LOC_Os05g05960OsAffx.10645.1.S1_at2/115+2961018..2961335hypothetical protein
LOC_Os05g05970OsAffx.26751.1.S1_at11/115+2963025..2963408hypothetical protein
LOC_Os05g05980OsAffx.14563.1.S1_at10/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05980OsAffx.26752.1.A1_at1/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05990OsAffx.25962.1.S1_at11/115+2976416..2981049transposon protein, putative, Mutator sub-class
LOC_Os05g05990OsAffx.14185.1.S1_x_at1/115+2976416..2981049transposon protein, putative, Mutator sub-class
LOC_Os05g06000OsAffx.26752.1.S1_at11/115+2981442..2981852hypothetical protein
LOC_Os05g06010OsAffx.4258.1.S1_at11/115+2985922..2986363hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14563.1.S1_at--561--1432Chr05:2965968..2965992 (25 bp)
AGAACACACTGAAGCCAGGAGATGT
LOC_Os05g05980
OsAffx.14563.1.S1_at--705--1312Chr05:2965987..2966011 (25 bp)
AGATGTGATCCAGTGCCGTGAATGT
LOC_Os05g05980
OsAffx.14563.1.S1_at--777--7352Chr05:2966004..2966028 (25 bp)
GTGAATGTGGCTATCGCATCCTCTA
LOC_Os05g05980
OsAffx.14563.1.S1_at--590--10151Chr05:2966015..2966039 (25 bp)
TATCGCATCCTCTACAAGAAGCGCA
LOC_Os05g05980
OsAffx.14563.1.S1_at--753--5131Chr05:2967394..2967418 (25 bp)
GCAAAGTACACTATGCTCAAATTGA
LOC_Os05g05980
OsAffx.14563.1.S1_at--539--272Chr05:2967426..2967450 (25 bp)
ATAGCTAAACCAAGTTCAACGTCAT
LOC_Os05g05980
OsAffx.14563.1.S1_at--315--1172Chr05:2967452..2967476 (25 bp)
AGTCACCACCACAGATTGCTTGTCT
LOC_Os05g05980
OsAffx.14563.1.S1_at--73--6531Chr05:2967522..2967542 (21 bp)
GATATTGTTCAATATGAAGCGCGCT
LOC_Os05g05980
OsAffx.14563.1.S1_at--751--1891Chr05:2967555..2967579 (25 bp)
ACGTCATGTGACATCAGTCTTTCTA
LOC_Os05g05980
OsAffx.14563.1.S1_at--183--5631Chr05:2968066..2968090 (25 bp)
GACAGAATTTTGGTTAAGCTGACAG
LOC_Os05g05980
OsAffx.14563.1.S1_at--678--5651NONE
GACAGATTTCAACAGCTTACATTTT
NONE
Target Sequence 
AGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGCACCCGCCGG
ACAAAAAGTCTGACAAGCAAAGTACACTATGCTCAAATTGAAAATGCTATAGCTAAACCAAGTTCAACGTCATCAGTCAC
CACCACAGATTGCTTGTCTTGGATATTGTTCAATATGAAGCGCGCTGAAGATATGGGAACGTCATGTGACATCAGTCTTT
CTAAAGCAATGTGTGATGACAGAATTTTGGTTAAGCTGACAGATTTCAACAGCTTACATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis