Browse Element(s) Details


OsAffx.14583.1.S1_at

Description tigr:9633.m00690
TID=OsAffx.14583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0774011/11leucine-rich repeat protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein
LOC_Os05g07740OsAffx.14583.1.S1_at11/115+4150945..4154446leucine-rich repeat protein kinase, putative, expressed
LOC_Os05g07750OsAffx.14584.3.S1_x_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07750OsAffx.14584.3.S1_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07764OsAffx.26775.1.S1_at11/115+4158028..4163796Carboxyl-terminal proteinase, putative, expressed
LOC_Os05g07780Os.20602.2.S1_x_at11/115+4169636..4171816hAT family dimerisation domain containing protein
LOC_Os05g07790Os.53811.1.S1_at11/115+4173297..4178469expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14583.1.S1_at--690--531Chr05:4153795..4153949 (25 bp)
ATCGCTCCCGAGTATGGATGCATGA
LOC_Os05g07740
OsAffx.14583.1.S1_at--222--9091Chr05:4153992..4154016 (25 bp)
TGCTACTCGAGATGATCACCGGGCG
LOC_Os05g07740
OsAffx.14583.1.S1_at--1126--4591Chr05:4154070..4154094 (25 bp)
GCGACCACCTTTGCCGGAAGCGAGA
LOC_Os05g07740
OsAffx.14583.1.S1_at--970--5811Chr05:4154093..4154117 (25 bp)
GACCCGGCGGAGATCATCGATGTGA
LOC_Os05g07740
OsAffx.14583.1.S1_at--703--8391Chr05:4154130..4154154 (25 bp)
GGCCCGATACCCAGGTCCAAGAGAT
LOC_Os05g07740
OsAffx.14583.1.S1_at--134--2791Chr05:4154148..4154172 (25 bp)
AAGAGATGCTGCAAGCTCTCGGCAT
LOC_Os05g07740
OsAffx.14583.1.S1_at--1022--3771Chr05:4154165..4154189 (25 bp)
CTCGGCATGGCATTGCTATGCGCAA
LOC_Os05g07740
OsAffx.14583.1.S1_at--455--10131Chr05:4154181..4154205 (25 bp)
TATGCGCAAGCCCACGACCTGAGGA
LOC_Os05g07740
OsAffx.14583.1.S1_at--610--5831Chr05:4154196..4154220 (25 bp)
GACCTGAGGATCGACCGACCATGAA
LOC_Os05g07740
OsAffx.14583.1.S1_at--793--8371Chr05:4154230..4154254 (25 bp)
GGCGTTGCTACGTGGCATTCGACAC
LOC_Os05g07740
OsAffx.14583.1.S1_at--872--2371Chr05:4154351..4154375 (25 bp)
AAACTCATGGCCCTTGCTAGACCGG
LOC_Os05g07740
Target Sequence 
ATCGCTCCCGAGTATGGATGCATGACCAAGATCACAACCAAGAGTGACGTGTACAGCTTCGGTGTGGTGCTACTCGAGAT
GATCACCGGGCGCCGCCCACTGGACCCGGCATTCGGGGAGGGACAAAGCGTGGTGCAATGGGTGCGCGACCACCTTTGCC
GGAAGCGAGACCCGGCGGAGATCATCGATGTGAGGTTGCAGGGCCGGCCCGATACCCAGGTCCAAGAGATGCTGCAAGCT
CTCGGCATGGCATTGCTATGCGCAAGCCCACGACCTGAGGATCGACCGACCATGAAGGATGTGGCGGCGTTGCTACGTGG
CATTCGACACGATGATGGCGTCGAGGCAAGAAAAGCCGGCAATGGAGTTGGTACTGATGCAGAGACAAGGAAGCGGGCTG
ACCCGAGACAGCCCATTTCACCGACCAAACTCATGGCCCTTGCTAGACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis