Browse Element(s) Details


OsAffx.14584.1.S1_at

Description tigr:9639.m03462
TID=OsAffx.14584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sugar transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3816011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38100OsAffx.7333.1.S1_at11/1111+22099355..22100803F-box domain containing protein
LOC_Os11g38110NANA11+22101852..22102217retrotransposon protein, putative, unclassified
LOC_Os11g38120Os.55133.1.S1_at10/1111+22103551..22105264F-box domain containing protein, expressed
LOC_Os11g38130Os.53273.1.S1_at11/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38130Os.54729.1.S1_s_at3/1111+22109670..22111199F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_s_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38140Os.54729.1.S1_at11/1111+22113554..22115552F-box domain containing protein, expressed
LOC_Os11g38150OsAffx.19227.1.S1_at11/1111+22117879..22122784hypothetical protein
LOC_Os11g38160OsAffx.14584.1.S1_at11/1111+22124289..22125964Sugar transporter family protein, expressed
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14584.1.S1_at--32--1931Chr11:22125404..22125428 (25 bp)
ACGGTGATCCTGGTGGTCGTCTCCT
LOC_Os11g38160
OsAffx.14584.1.S1_at--626--3431Chr11:22125503..22125527 (25 bp)
CAGATGCTCGTCTCGGAGGCGCTGA
LOC_Os11g38160
OsAffx.14584.1.S1_at--1115--2931Chr11:22125561..22125585 (25 bp)
AAGGCGCGCCGAGCAAGGCGTACGC
LOC_Os11g38160
OsAffx.14584.1.S1_at--627--9611Chr11:22125603..22125627 (25 bp)
TCATCGGCGTCTACTCGACGGGCTT
LOC_Os11g38160
OsAffx.14584.1.S1_at--940--8471Chr11:22125653..22125677 (25 bp)
TGGCTGGTGCCCACCGAGGTCCTGC
LOC_Os11g38160
OsAffx.14584.1.S1_at--364--4351Chr11:22125663..22125687 (25 bp)
CCACCGAGGTCCTGCCGCTGGAGGT
LOC_Os11g38160
OsAffx.14584.1.S1_at--137--7551Chr11:22125713..22125737 (25 bp)
GTGGCGACGTGCTTCGCGCTCACCG
LOC_Os11g38160
OsAffx.14584.1.S1_at--411--7291Chr11:22125769..22125793 (25 bp)
GTGCCGGATGAAGGCGTGGATCTTC
LOC_Os11g38160
OsAffx.14584.1.S1_at--337--4431Chr11:22125818..22125842 (25 bp)
GCCATGACGGCTTTCGTCTACTTCT
LOC_Os11g38160
OsAffx.14584.1.S1_at--68--10311Chr11:22125829..22125853 (25 bp)
TTTCGTCTACTTCTTCTTGCCGGAG
LOC_Os11g38160
OsAffx.14584.1.S1_at--225--10651Chr11:22125864..22125888 (25 bp)
TTCCGATCGAACAGGTTGGGAGCGT
LOC_Os11g38160
Target Sequence 
ACGGTGATCCTGGTGGTCGTCTCCTCGGCGTCGACGCTCGCGTCCATGTTCCTCGTCGACCGCTTCGGCAGGAGGGCGCT
GCTCCTCGCCGGCGGCGCCCAGATGCTCGTCTCGGAGGCGCTGATCGGCAGCATCATGGCGGCGAAGCTGGGCGACGAAG
GCGCGCCGAGCAAGGCGTACGCCACGCTGCTCGTCGTCCTCATCGGCGTCTACTCGACGGGCTTCGGGTGGTCGTGGGGT
CCCCTGAGCTGGCTGGTGCCCACCGAGGTCCTGCCGCTGGAGGTCCGGTCGGCGGGGCAGAGCGTGGCGGTGGCGACGTG
CTTCGCGCTCACCGTGCTCGTCGCGCAGTGCTTCCTCGCCGCGCTGTGCCGGATGAAGGCGTGGATCTTCTTCTTCTTCG
CTGGGTGGATCGCCGCCATGACGGCTTTCGTCTACTTCTTCTTGCCGGAGACGAAGGGGATTCCGATCGAACAGGTTGGG
AGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis