Browse Element(s) Details


OsAffx.14723.1.S1_x_at

Description tigr:9633.m01439
TID=OsAffx.14723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g161708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16120NANA5+9090785..9096940retrotransposon protein, putative, unclassified
LOC_Os05g16130NANA5+9097558..9100785transposon protein, putative, unclassified
LOC_Os05g16140OsAffx.4355.1.S1_at11/115+9107443..9109023hypothetical protein
LOC_Os05g16150OsAffx.14721.1.S1_at11/115+9115197..9116724hypothetical protein
LOC_Os05g16160OsAffx.14722.1.S1_at11/115+9117218..9117766hypothetical protein
LOC_Os05g16160OsAffx.14722.1.S1_x_at11/115+9117218..9117766hypothetical protein
LOC_Os05g16160Os.49640.1.S1_at2/115+9117218..9117766hypothetical protein
LOC_Os05g16170OsAffx.14723.1.S1_x_at8/115+9120092..9122787hypothetical protein
LOC_Os05g16170OsAffx.14723.1.S1_at7/115+9120092..9122787hypothetical protein
LOC_Os05g16170OsAffx.31529.1.S1_at2/115+9120092..9122787hypothetical protein
LOC_Os05g16180OsAffx.4356.1.S1_at10/115+9123860..9129102NB-ARC domain containing protein
LOC_Os05g16200OsAffx.4357.1.S1_at11/115+9130647..9134281NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14723.1.S1_x_at--1014--3311Chr05:9120123..9120147 (25 bp)
CACTTGGCACTTGGCAAGAAAGAAA
LOC_Os05g16170
OsAffx.14723.1.S1_x_at--86--5512Chr05:9120149..9120173 (25 bp)
GAACACGAACCAAGAGAGAGGCCAA
LOC_Os05g16170
OsAffx.14723.1.S1_x_at--786--6011Chr05:9120164..9120188 (25 bp)
GAGAGGCCAAGAAAGGAACACGAAC
LOC_Os05g16170
OsAffx.14723.1.S1_x_at--198--2311Chr05:9120175..9120199 (25 bp)
AAAGGAACACGAACACAGTGCCGGG
LOC_Os05g16170
OsAffx.14723.1.S1_x_at--741--7631NONE
GGGAGCTCGGTTGCCGAAGCACTCA
NONE
OsAffx.14723.1.S1_x_at--886--9431NONE
TCGGTTGCCGAAGCACTCAATGCAG
NONE
OsAffx.14723.1.S1_x_at--150--7911NONE
GGTTGCCGAAGCACTCAATGCAGAC
NONE
OsAffx.14723.1.S1_x_at--975--6691Chr05:9122218..9122382 (25 bp)
GTTCCTGGGGTATCTGTGCCACGAC
LOC_Os05g16170
OsAffx.14723.1.S1_x_at--450--7691Chr05:9122225..9122389 (25 bp)
GGGTATCTGTGCCACGACGTGGTTG
LOC_Os05g16170
OsAffx.14723.1.S1_x_at--470--591Chr05:9122719..9122743 (25 bp)
ATGCCAAGACCTTTCACAGCGATGA
LOC_Os05g16170
OsAffx.14723.1.S1_x_at--877--9691Chr05:9122732..9122756 (25 bp)
TCACAGCGATGAAGAAGCTCGACAT
LOC_Os05g16170
Target Sequence 
CACTTGGCACTTGGCAAGAAAGAAAGGAACACGAACCAAGAGAGAGGCCAAGAAAGGAACACGAACACAGTGCCGGGGAG
CTCGGTTGCCGAAGCACTCAATGCAGACAGTTCAAGATCAGAGCTGTGAAGGTAAAGGAGGATCTGGAAAGTTTTGTTCC
TGGGGTATCTGTGCCACGACGTGGTTGCCTGGAGATTCGTGAGGAAGGTGGTGAAGTGTTCATATCACTGCTGAACATGC
CAAGACCTTTCACAGCGATGAAGAAGCTCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14723.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis