Browse Element(s) Details


OsAffx.14751.1.S1_at

Description tigr:9631.m04028
TID=OsAffx.14751.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1871010/11hypothetical protein
LOC_Os04g207309/11hypothetical protein
LOC_Os05g184289/11hypothetical protein
LOC_Os05g184469/11hypothetical protein
LOC_Os03g418908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18690NANA4+10326701..10332753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18700OsAffx.25367.1.S1_at1/114+10333667..10342807retrotransposon protein, putative, unclassified
LOC_Os04g18710OsAffx.14751.1.S1_at10/114+10350260..10350985hypothetical protein
LOC_Os04g18720NANA4+10358950..10359664retrotransposon, putative, centromere-specific
LOC_Os04g18730OsAffx.14945.1.S1_x_at2/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.30486.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.14945.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.8201.1.S1_x_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.3812.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.9762.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.3812.1.S1_x_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.22699.1.S1_x_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.20414.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18740Os.45173.1.S1_x_at2/114+10373514..10376552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18740Os.46610.1.S1_x_at1/114+10373514..10376552retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14751.1.S1_at--859--4216Chr03:23216507..23216531 (25 bp)
CCGCAGTCATGGTTCGTGTAAGCAT
LOC_Os03g41890
OsAffx.14751.1.S1_at--625--8696Chr03:23216608..23216632 (25 bp)
TGTGCTTATGTTGCTATCATCCGCC
LOC_Os03g41890
OsAffx.14751.1.S1_at--374--4455Chr03:23216630..23216654 (25 bp)
GCCTTCGCTATGAGCTACCTGAGAT
LOC_Os03g41890
OsAffx.14751.1.S1_at--1122--5215Chr03:23216659..23216683 (25 bp)
GAATTTTACTGCTACGTTCCATCCT
LOC_Os03g41890
OsAffx.14751.1.S1_at--411--2076Chr03:23216760..23216784 (25 bp)
ACTTGCAAACTTTGTGCGCTCACTA
LOC_Os03g41890
OsAffx.14751.1.S1_at--1088--6494Chr03:23216785..23216809 (25 bp)
GATATGCTTTATCGCTCAACCTTTG
LOC_Os03g41890
OsAffx.14751.1.S1_at--1069--4114Chr03:19343323..19343347 (25 bp)
CGCACCAGGGTAGCCACTTTAGAAA
NONE
OsAffx.14751.1.S1_at--511--10135Chr03:19343355..19343379 (25 bp)
TATGCCAAGGTATCGCCAGGGACAT
NONE
OsAffx.14751.1.S1_at--570--1073Chr03:19343372..19343396 (25 bp)
AGGGACATTATACACCGGAGTTCAT
NONE
OsAffx.14751.1.S1_at--670--4575Chr03:23216982..23217006 (25 bp)
GCGCGTCGATGTCAGGACTGCTTAT
LOC_Os03g41890
OsAffx.14751.1.S1_at--461--10115Chr03:23217031..23217055 (25 bp)
TATGGACCGCCAGAGTATGTTCAAT
LOC_Os03g41890
Target Sequence 
CCGCAGTCATGGTTCGTGTAAGCATTCGGGGTAGAACTCCACTAGAGAAAGACCTTCAATATACTGGTTATGGGTGGGAT
ATTAAGTCCGCTTTGCAAAACTGTGCTTATGTTGCTATCATCCGCCTTCGCTATGAGCTACCTGAGATAGAAGAATTTTA
CTGCTACGTTCCATCCTTAACTGAGGGAGCTCAACACACTACCTACCCAGGGTTAGCTGAAATAGGTGTAGGACTACATA
CCCCATACCTCCAACTTGCAAACTTTGTGCGCTCACTAGATATGCTTTATCGCTCAACCTTTGCTGAGCTGCAACGCGTC
CGCACCAGGGTAGCCACTTTAGAAAGAAGCATTATGCCAAGGTATCGCCAGGGACATTATACACCGGAGTTCATGTTTGG
TGAGGATGCCATGCTTGCACCAGCAGAAGATATACCACCACCTGTTGGAATGTATATTGAAAGAANCCCACCTTCGCGCG
TCGATGTCAGGACTGCTTATCCTCCACTTGGAACNACTGGACCGTATGGACCGCCAGAGTATGTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis