Browse Element(s) Details


OsAffx.14945.1.S1_at

Description tigr:9633.m03109
TID=OsAffx.14945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g187301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18700OsAffx.25367.1.S1_at1/114+10333667..10342807retrotransposon protein, putative, unclassified
LOC_Os04g18710OsAffx.14751.1.S1_at10/114+10350260..10350985hypothetical protein
LOC_Os04g18720NANA4+10358950..10359664retrotransposon, putative, centromere-specific
LOC_Os04g18730OsAffx.14945.1.S1_x_at2/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.30486.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.14945.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.8201.1.S1_x_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.3812.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.9762.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.3812.1.S1_x_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.22699.1.S1_x_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18730OsAffx.20414.1.S1_at1/114+10363613..10372269retrotransposon protein, putative, unclassified
LOC_Os04g18740Os.45173.1.S1_x_at2/114+10373514..10376552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18740Os.46610.1.S1_x_at1/114+10373514..10376552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18750Os.46610.1.S1_x_at3/114+10377635..10389230retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18750OsAffx.31869.5.S1_x_at2/114+10377635..10389230retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18750Os.45173.1.S1_x_at2/114+10377635..10389230retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18750OsAffx.20733.1.A1_x_at1/114+10377635..10389230retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18760NANA4+10392249..10396777retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14945.1.S1_at--200--93117Chr11:11879402..11879426 (25 bp)
TCCCGGAAACAGAGTGAAGATCGGC
NONE
OsAffx.14945.1.S1_at--655--1873Chr05:19742375..19742399 (25 bp)
GAGTTCGAGTCAGACGGGGTTAGCC
NONE
OsAffx.14945.1.S1_at--486--7673Chr05:19742391..19742415 (25 bp)
GGGTTAGCCGATTAAGCCGAATCCG
NONE
OsAffx.14945.1.S1_at--307--3952Chr05:19742397..19742418 (22 bp)
GCCGATTAAGCCGAATCCGACATTG
NONE
OsAffx.14945.1.S1_at--309--3953Chr05:19742398..19742418 (21 bp)
CCGATTAAGCCGAATCCGACATTGC
NONE
OsAffx.14945.1.S1_at--591--4014Chr05:19742399..19742472 (25 bp)
CGATTAAGCCGAATCCGACATTGCC
NONE
OsAffx.14945.1.S1_at--427--6554Chr05:19742400..19742473 (25 bp)
GATTAAGCCGAATCCGACATTGCCA
NONE
OsAffx.14945.1.S1_at--861--131NONE
ATTAAGCCGAATCCGACATTGCCAG
NONE
OsAffx.14945.1.S1_at--156--2671NONE
AAGCCGAATCCGACATTGCCAGCCT
NONE
OsAffx.14945.1.S1_at--533--1651NONE
AGCCGAATCCGACATTGCCAGCCTG
NONE
OsAffx.14945.1.S1_at--585--4491NONE
GCCGAATCCGACATTGCCAGCCTGG
NONE
Target Sequence 
TCCCGGAAACAGAGTGAAGATCGGCTGGAGTCCGAATCGGCTACGGCTAAGATCGGCAGAGTTCGAGTCAGACGGGGTTA
GCCGATTAAGCCGAATCCGACATTGCCAGCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis