Browse Element(s) Details


OsAffx.14795.1.S1_at

Description tigr:9633.m02115
TID=OsAffx.14795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2379011/11retrotransposon, putative, centromere-specific, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23750Os.10827.1.S1_x_at10/115+13566799..13570504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23750Os.46055.2.S1_x_at5/115+13566799..13570504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23760NANA5+13571224..13571676hypothetical protein
LOC_Os05g23770OsAffx.25936.1.S1_s_at9/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.7.S1_s_at8/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.2.S1_x_at6/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.5.S1_x_at2/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23780OsAffx.14794.1.S1_at11/115+13578265..13578921SRF-type transcription factor family protein
LOC_Os05g23790OsAffx.14795.1.S1_at11/115+13585280..13588875retrotransposon, putative, centromere-specific, expressed
LOC_Os05g23800OsAffx.4408.1.S1_at10/115+13590328..13594018RNA recognition motif family protein
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14795.1.S1_at--333--6571Chr05:13588418..13588442 (25 bp)
GATTCAGAATCATGGCCTGCGCAAA
LOC_Os05g23790
OsAffx.14795.1.S1_at--785--2091Chr05:13588457..13588481 (25 bp)
ACATCTGCTACATCTGCGGAGACGA
LOC_Os05g23790
OsAffx.14795.1.S1_at--407--4091Chr05:13588479..13588503 (25 bp)
CGACGATCACATGGAGCACTTCTGC
LOC_Os05g23790
OsAffx.14795.1.S1_at--31--9491Chr05:13588499..13588523 (25 bp)
TCTGCCCTTACAACTACATGTTCGG
LOC_Os05g23790
OsAffx.14795.1.S1_at--308--731Chr05:13588516..13588540 (25 bp)
ATGTTCGGGCGATACTTCAGCGACA
LOC_Os05g23790
OsAffx.14795.1.S1_at--114--1011Chr05:13588573..13588597 (25 bp)
AGGATCACCTCCAGGGATCATCGAG
LOC_Os05g23790
OsAffx.14795.1.S1_at--883--6431Chr05:13588588..13588612 (25 bp)
GATCATCGAGAGTTCCTGCGGCGTT
LOC_Os05g23790
OsAffx.14795.1.S1_at--1031--7471Chr05:13588648..13588672 (25 bp)
GTGTGGGATCTCGAGGACCTCTTCA
LOC_Os05g23790
OsAffx.14795.1.S1_at--81--1591Chr05:13588683..13588707 (25 bp)
AGCTCTGCTCATGTGGAATGTTCCC
LOC_Os05g23790
OsAffx.14795.1.S1_at--430--5471Chr05:13588716..13588740 (25 bp)
GAACTACCTGTGTGGATGCACGACT
LOC_Os05g23790
OsAffx.14795.1.S1_at--524--1951Chr05:13588738..13588762 (25 bp)
ACTGGAATCCACATGAGCTTCGGCT
LOC_Os05g23790
Target Sequence 
GATTCAGAATCATGGCCTGCGCAAAGTCCCCAGAGCAAGACATCTGCTACATCTGCGGAGACGACGATCACATGGAGCAC
TTCTGCCCTTACAACTACATGTTCGGGCGATACTTCAGCGACACCTGCAGAGGAGAGTGCCCTCCCCAGGAGCACAGGAT
CACCTCCAGGGATCATCGAGAGTTCCTGCGGCGTTTCGTGCGCGTGACGAACCTGCCGCCGGGGTTCGGGGTGTGGGATC
TCGAGGACCTCTTCAGCCCGTTCGGAGCTCTGCTCATGTGGAATGTTCCCAAGTTCAGGAACTACCTGTGTGGATGCACG
ACTGGAATCCACATGAGCTTCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis