Browse Element(s) Details


OsAffx.14808.1.S1_at

Description tigr:9633.m02204
TID=OsAffx.14808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tRNA isopentenyl transferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2466011/11IPP transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24650Os.7029.1.S1_at11/115+14166965..14168285expressed protein
LOC_Os05g24660OsAffx.14808.1.S1_at11/115+14183400..14184425IPP transferase family protein, expressed
LOC_Os05g24670NANA5+14195613..14197765retrotransposon protein, putative, unclassified
LOC_Os05g24680OsAffx.14809.1.S1_at11/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680OsAffx.20689.1.A1_x_at2/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680Os.23638.1.A1_x_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680OsAffx.20673.1.A1_x_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24680Os.8606.1.S1_at1/115+14202072..14214305retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009691biological_processcytokinin biosynthesis
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14808.1.S1_at--993--9151Chr05:14183971..14183995 (25 bp)
TGCGCCACCGCGTGGACCGCATGGT
LOC_Os05g24660
OsAffx.14808.1.S1_at--94--7671Chr05:14183882..14183906 (25 bp)
GGGATCCGGAGGTCCATCGGCGTGC
LOC_Os05g24660
OsAffx.14808.1.S1_at--647--6231Chr05:14183853..14183877 (25 bp)
GATGGACGCCTACCTCCGGCAGGAA
LOC_Os05g24660
OsAffx.14808.1.S1_at--133--4551Chr05:14183819..14183843 (25 bp)
GCCCTACTGACGCACGGAGACAAGT
LOC_Os05g24660
OsAffx.14808.1.S1_at--107--8071Chr05:14183804..14183828 (25 bp)
GGAGACAAGTACAAGGTCGCGCTGT
LOC_Os05g24660
OsAffx.14808.1.S1_at--1136--9831Chr05:14183795..14183819 (25 bp)
TACAAGGTCGCGCTGTTGGCTTCCG
LOC_Os05g24660
OsAffx.14808.1.S1_at--338--3211Chr05:14183757..14183781 (25 bp)
CAAGGCGAACACGTGGAGTCTGGCA
LOC_Os05g24660
OsAffx.14808.1.S1_at--664--5491Chr05:14183751..14183775 (25 bp)
GAACACGTGGAGTCTGGCACGCCGC
LOC_Os05g24660
OsAffx.14808.1.S1_at--610--4411Chr05:14183728..14183752 (25 bp)
GCCAGCTGCGGAAGATCCACCGGCT
LOC_Os05g24660
OsAffx.14808.1.S1_at--519--3931Chr05:14183675..14183699 (25 bp)
CGGCTCGACGTCACCAGAGTGCTGG
LOC_Os05g24660
OsAffx.14808.1.S1_at--527--931Chr05:14183602..14183626 (25 bp)
AGGCAGACGTCATCGCGCCTGCGGC
LOC_Os05g24660
Target Sequence 
TGCGCCACCGCGTGGACCGCATGGTGGAGCAGGGGCTCGTCGGCGAGGTGCGGGGGCTGTTCCGGCTGGACGACGCCGAC
TACTCCCGGGGGATCCGGAGGTCCATCGGCGTGCCGGAGATGGACGCCTACCTCCGGCAGGAAGCCACCGGCGCCCTACT
GACGCACGGAGACAAGTACAAGGTCGCGCTGTTGGCTTCCGCCGTCGGCGAGATCAAGGCGAACACGTGGAGTCTGGCAC
GCCGCCAGCTGCGGAAGATCCACCGGCTCCGCGGCCTGCCCGGCTGGAGCCTCCGCCGGCTCGACGTCACCAGAGTGCTG
GAGTTGAAGGTGGAGGCCCGCAGCGAAGCGGAGTGCGCCGCCGCGTGGGAGGCAGACGTCATCGCGCCTGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis