Browse Element(s) Details


OsAffx.14850.1.S1_x_at

Description tigr:9633.m02501
TID=OsAffx.14850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g275109/11hypothetical protein
LOC_Os08g108704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27470NANA5+15895302..15899444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27480NANA5+15901933..15902550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27490OsAffx.11900.1.S1_at7/115+15907259..15912772retrotransposon protein, putative, unclassified
LOC_Os05g27490OsAffx.32166.1771.S1_s_at1/115+15907259..15912772retrotransposon protein, putative, unclassified
LOC_Os05g27500OsAffx.27043.1.S1_at11/115+15916461..15920308carboxyl-terminal peptidase, putative
LOC_Os05g27510OsAffx.14850.1.S1_x_at9/115+15923646..15924609hypothetical protein
LOC_Os05g27510Os.24478.1.S1_at6/115+15923646..15924609hypothetical protein
LOC_Os05g27520OsAffx.14851.1.S1_at11/115+15929458..15932338expressed protein
LOC_Os05g27520Os.14876.1.S1_at5/115+15929458..15932338expressed protein
LOC_Os05g27530Os.28554.1.S1_at11/115+15941088..15945585Ras family protein, expressed
LOC_Os05g27540OsAffx.25844.2.S1_at11/115+15948154..15949687Pattern formation protein EMB30, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14850.1.S1_x_at--758--2671Chr05:15923708..15923732 (25 bp)
AAGCGGAGGGAATCAATGTGAAGAT
LOC_Os05g27510
OsAffx.14850.1.S1_x_at--934--4171NONE
CCCATGGAGGCCTAGAATTGGAGGT
NONE
OsAffx.14850.1.S1_x_at--161--3511NONE
CATGGAGGCCTAGAATTGGAGGTAT
NONE
OsAffx.14850.1.S1_x_at--591--3172Chr05:15924393..15924417 (25 bp)
AATTGGAGGTATCGAGTTGTTAATA
LOC_Os05g27510
OsAffx.14850.1.S1_x_at--665--8012Chr05:15924397..15924421 (25 bp)
GGAGGTATCGAGTTGTTAATATATG
LOC_Os05g27510
OsAffx.14850.1.S1_x_at--544--5353Chr08:6397235..6397340 (25 bp)
GAAGATTATCGTTTGAGGCTGAGTC
LOC_Os08g10870
OsAffx.14850.1.S1_x_at--1006--6533Chr08:6397238..6397343 (25 bp)
GATTATCGTTTGAGGCTGAGTCGGT
LOC_Os08g10870
OsAffx.14850.1.S1_x_at--445--153Chr08:6397239..6397344 (25 bp)
ATTATCGTTTGAGGCTGAGTCGGTG
LOC_Os08g10870
OsAffx.14850.1.S1_x_at--509--10253Chr08:6397327..6397351 (25 bp)
TTTGAGGCTGAGTCGGTGTTTATTC
LOC_Os08g10870
OsAffx.14850.1.S1_x_at--421--1151Chr05:15924536..15924560 (25 bp)
AGTCGGTGTTTATTCAGGTGATGCC
LOC_Os05g27510
OsAffx.14850.1.S1_x_at--435--10531Chr05:15924548..15924572 (25 bp)
TTCAGGTGATGCCACTTTGGAATGC
LOC_Os05g27510
Target Sequence 
AAGCGGAGGGAATCAATGTGAAGATGGAAATGAGGGGTTTGATTACCGCTGCCCATGGAGGCCTAGAATTGGAGGTATCG
AGTTGTTAATATATGTTGCTTTTATAGGAAGATTATCGTTTGAGGCTGAGTCGGTGTTTATTCAGGTGATGCCACTTTGG
AATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14850.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis