Browse Element(s) Details


OsAffx.14851.1.S1_at

Description tigr:9633.m02502
TID=OsAffx.14851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to GTP-binding regulatory protein alpha chain - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2752011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27490OsAffx.11900.1.S1_at7/115+15907259..15912772retrotransposon protein, putative, unclassified
LOC_Os05g27490OsAffx.32166.1771.S1_s_at1/115+15907259..15912772retrotransposon protein, putative, unclassified
LOC_Os05g27500OsAffx.27043.1.S1_at11/115+15916461..15920308carboxyl-terminal peptidase, putative
LOC_Os05g27510OsAffx.14850.1.S1_x_at9/115+15923646..15924609hypothetical protein
LOC_Os05g27510Os.24478.1.S1_at6/115+15923646..15924609hypothetical protein
LOC_Os05g27520OsAffx.14851.1.S1_at11/115+15929458..15932338expressed protein
LOC_Os05g27520Os.14876.1.S1_at5/115+15929458..15932338expressed protein
LOC_Os05g27530Os.28554.1.S1_at11/115+15941088..15945585Ras family protein, expressed
LOC_Os05g27540OsAffx.25844.2.S1_at11/115+15948154..15949687Pattern formation protein EMB30, putative
LOC_Os05g27550OsAffx.4443.1.S1_at11/115+15950224..15951362F-box domain containing protein
LOC_Os05g27560Os.47463.1.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27560Os.14491.2.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14851.1.S1_at--979--4731Chr05:15932182..15932205 (24 bp)
GCTGAAACAGCCGAAAATGCAAAAA
LOC_Os05g27520
OsAffx.14851.1.S1_at--857--8011Chr05:15930243..15930267 (25 bp)
GGAGGAGAAACTATTATTCTACCAT
LOC_Os05g27520
OsAffx.14851.1.S1_at--484--111Chr05:15930228..15930252 (25 bp)
ATTCTACCATTATTACGCAGTCTAC
LOC_Os05g27520
OsAffx.14851.1.S1_at--1117--9931Chr05:15930219..15930239 (21 bp)
TACGCAGTCTACATTACTAAGTTGG
LOC_Os05g27520
OsAffx.14851.1.S1_at--14--7571Chr05:15929860..15929884 (25 bp)
GGGCCTTTATCCATAGAACCATCGA
LOC_Os05g27520
OsAffx.14851.1.S1_at--1007--10131Chr05:15929853..15929877 (25 bp)
TATCCATAGAACCATCGAGGAAGGA
LOC_Os05g27520
OsAffx.14851.1.S1_at--222--7611Chr05:15929564..15929850 (25 bp)
GGGAATTTTGTGTACATCAATTAGT
LOC_Os05g27520
OsAffx.14851.1.S1_at--24--9731Chr05:15929548..15929572 (25 bp)
TCAATTAGTGAAGATCGTGCCTCAA
LOC_Os05g27520
OsAffx.14851.1.S1_at--18--2811Chr05:15929538..15929562 (25 bp)
AAGATCGTGCCTCAAGACCACGACT
LOC_Os05g27520
OsAffx.14851.1.S1_at--1044--3131Chr05:15929507..15929531 (25 bp)
AATTATGGAGTGCAATACGTGGTGA
LOC_Os05g27520
OsAffx.14851.1.S1_at--489--3191Chr05:15929495..15929519 (25 bp)
CAATACGTGGTGATGATTGTGTCGA
LOC_Os05g27520
Target Sequence 
GCTGAAACAGCCGAAAATGCAAAAATTAAGCTCCTTTTCCAAACTGGCTTTGATGAGGCAGAACTTAGGAGCTACACATC
AGTTATCCATGCAAACGTCTATCAGACAATTAAAATACTATATGAAGGAGCAAAAGAACTCTCACAAGTGGAATCAGATT
CCTCAAAGTATGTTATATCCCCAGATAACCAGGAAACTTACTTACGTGGAAGTATTCTGCAACTTCCTGATTGTGCACAA
TACTTCATGGAAAATTTGGATCGATTAGCTGAAGCAGATTATGTGCCAACAAAGGGGCTAAAATTCAATATTAGGGAGGA
GAAACTATTATTCTACCATTATTACGCAGTCTACATTACTAAGTTGGAGGGGCCTTTATCCATAGAACCATCGAGGAAGG
AAGGGGAATTTTGTGTACATCAATTAGTGAAGATCGTGCCTCAAGACCACGACTCTGATGAATTATGGAGTGCAATACGT
GGTGATGATTGTGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis