Browse Element(s) Details


OsAffx.14853.1.S1_at

Description tigr:9633.m02510
TID=OsAffx.14853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2758011/11Wound-induced protein WI12 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27530Os.28554.1.S1_at11/115+15941088..15945585Ras family protein, expressed
LOC_Os05g27540OsAffx.25844.2.S1_at11/115+15948154..15949687Pattern formation protein EMB30, putative
LOC_Os05g27550OsAffx.4443.1.S1_at11/115+15950224..15951362F-box domain containing protein
LOC_Os05g27560Os.47463.1.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27560Os.14491.2.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27570OsAffx.27044.1.S1_at11/115+15966889..15968454Protein of unknown function, DUF614 containing protein
LOC_Os05g27580OsAffx.14853.1.S1_at11/115+15969031..15972672Wound-induced protein WI12 containing protein
LOC_Os05g27590Os.57186.1.S1_at11/115+15980195..15981011Wound-induced protein WI12 containing protein, expressed
LOC_Os05g27600NANA5+15982919..15985405transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27610NANA5+15986824..15989203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27620Os.47463.1.S1_x_at5/115+15989659..15991866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27620Os.14491.2.S1_x_at4/115+15989659..15991866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27630OsAffx.19542.3.S1_x_at5/115+15995120..15998943retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14853.1.S1_at--912--6051Chr05:15972489..15972513 (25 bp)
GATGTTGGTAAAACTTTCGGCGACT
LOC_Os05g27580
OsAffx.14853.1.S1_at--627--10311Chr05:15972477..15972499 (23 bp)
TTTCGGCGACTACGACAGCCCAGCA
LOC_Os05g27580
OsAffx.14853.1.S1_at--872--5891Chr05:15969558..15969582 (25 bp)
GAGCTGGCTAGCGACAAGGTACACG
LOC_Os05g27580
OsAffx.14853.1.S1_at--88--2911Chr05:15969543..15969567 (25 bp)
AAGGTACACGCGAACGGCGACGCCG
LOC_Os05g27580
OsAffx.14853.1.S1_at--677--3771Chr05:15969408..15969432 (25 bp)
CTGCTGAACCCGGACGTGGACTGGT
LOC_Os05g27580
OsAffx.14853.1.S1_at--99--2691Chr05:15969234..15969258 (25 bp)
AAGCTGTACTGGGTGCACGCGTGGA
LOC_Os05g27580
OsAffx.14853.1.S1_at--310--8371Chr05:15969183..15969207 (25 bp)
GGCGTCCGCGAGTACTGCAACACCG
LOC_Os05g27580
OsAffx.14853.1.S1_at--241--6091Chr05:15969174..15969198 (25 bp)
GAGTACTGCAACACCGCGCTCGTCG
LOC_Os05g27580
OsAffx.14853.1.S1_at--536--9351Chr05:15969087..15969111 (25 bp)
TCGCAGTCGGAGCAGTTGTGGCAGA
LOC_Os05g27580
OsAffx.14853.1.S1_at--364--10831Chr05:15969072..15969096 (25 bp)
TTGTGGCAGAGCAGGCTGCCTGACC
LOC_Os05g27580
OsAffx.14853.1.S1_at--204--5011Chr05:15969062..15969086 (25 bp)
GCAGGCTGCCTGACCGGGCTCGCAA
LOC_Os05g27580
Target Sequence 
GATGTTGGTAAAACTTTCGGCGACTACGACAGCCCAGCAGCAGCAGCAGAGCTGGCTAGCGACAAGGTACACGCGAACGG
CGACGCCGCCGATGCCGGCGGCGGCGGCGAGGAGGAGGTGGTGGTGAGCAGCAGCAAGGCGGTGGTGGAGGAGCTGTACC
GCGCGCTGGAGCGCGGCGACGGGGACGCCGTGCGGCGGCTGCTGAACCCGGACGTGGACTGGTGGTTCCACGGGCCCCGC
GCGCACCAGCATCTGGTGCTCATGCGCCTCCTCACCGGCGGCGGCGGCGGCGCGGCGGGGCTCCCGTTCAAGGTCCGCGG
CGTGGACGCCTTCGGGGAGACGGTGCTGGCGGAGGGGACGGACGCCACGGGGAAGCTGTACTGGGTGCACGCGTGGACGG
TCGGCCCCGGCGGCCGCGTCACCGGCGTCCGCGAGTACTGCAACACCGCGCTCGTCGTCACCAGGCTCGGCGGCGGCGGA
GGCGGCAAGGGAGCCGAGGCGGCGGCGCCGTGCTCGAGGTCGCAGTCGGAGCAGTTGTGGCAGAGCAGGCTGCCTGACCG
GGCTCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis