Browse Element(s) Details


OsAffx.14871.1.S1_at

Description tigr:9633.m02678
TID=OsAffx.14871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2968011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29160OsAffx.18924.3.S1_at11/115+17050358..17051401hypothetical protein
LOC_Os05g29160OsAffx.18924.2.S1_x_at4/115+17050358..17051401hypothetical protein
LOC_Os05g29170Os.49558.1.S1_at11/115+17054231..17054770expressed protein
LOC_Os05g29174Os.46012.2.S1_x_at9/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.46012.3.S1_x_at6/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.27088.1.A1_x_at4/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.54691.1.S1_x_at1/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29676OsAffx.25718.1.S1_at2/115+17068353..17071320Zinc finger, C3HC4 type family protein
LOC_Os05g29680OsAffx.14871.1.S1_at11/115+17073457..17073885hypothetical protein
LOC_Os05g29690NANA5+17077033..17081239retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29700OsAffx.11392.2.S1_x_at11/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29700OsAffx.2719.1.S1_at5/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29700OsAffx.11392.1.S1_at1/115+17087370..17091267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g29710Os.9300.1.S1_at10/115+17094716..17096099Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14871.1.S1_at--665--1451Chr05:17073728..17073752 (25 bp)
AGAAGGTGCGGTTGCCTGACCCGTA
LOC_Os05g29680
OsAffx.14871.1.S1_at--657--4511Chr05:17073667..17073691 (25 bp)
GCCGAGCGCTCAGTACCTGGAGGTC
LOC_Os05g29680
OsAffx.14871.1.S1_at--256--8171Chr05:17073628..17073652 (25 bp)
GGAACTGGAGTACACTGGCCACTGC
LOC_Os05g29680
OsAffx.14871.1.S1_at--937--2171Chr05:17073617..17073641 (25 bp)
ACACTGGCCACTGCAAGGAGCTGGA
LOC_Os05g29680
OsAffx.14871.1.S1_at--792--8411Chr05:17073580..17073604 (25 bp)
GGCCTTCGAGAAGGATGGCTACTTT
LOC_Os05g29680
OsAffx.14871.1.S1_at--555--3731Chr05:17073562..17073586 (25 bp)
CTACTTTGTGGTGGATGAGAGTTAC
LOC_Os05g29680
OsAffx.14871.1.S1_at--351--1351Chr05:17073545..17073569 (25 bp)
AGAGTTACCTGGAGGAGACTGCCGC
LOC_Os05g29680
OsAffx.14871.1.S1_at--487--1371Chr05:17073530..17073554 (25 bp)
AGACTGCCGCGTGCCTGGCTATGGC
LOC_Os05g29680
OsAffx.14871.1.S1_at--932--3911Chr05:17073516..17073540 (25 bp)
CTGGCTATGGCCAATGAACAGCTGG
LOC_Os05g29680
OsAffx.14871.1.S1_at--1150--3891Chr05:17073495..17073519 (25 bp)
CTGGCCAAGTTGGACTTCAGCGGTA
LOC_Os05g29680
OsAffx.14871.1.S1_at--602--1251Chr05:17073488..17073512 (25 bp)
AGTTGGACTTCAGCGGTATCGTCTT
LOC_Os05g29680
Target Sequence 
AGAAGGTGCGGTTGCCTGACCCGTACGTCGCCGCCATCCTCTCGCTGAAGAGGGAGCCGCCGCCGAGCGCTCAGTACCTG
GAGGTCCTCTCGCCGGAGAAGGAACTGGAGTACACTGGCCACTGCAAGGAGCTGGAGGACGAGCTGGAGGCCTTCGAGAA
GGATGGCTACTTTGTGGTGGATGAGAGTTACCTGGAGGAGACTGCCGCGTGCCTGGCTATGGCCAATGAACAGCTGGCCA
AGTTGGACTTCAGCGGTATCGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis