Browse Element(s) Details


OsAffx.14892.1.S1_at

Description tigr:9633.m02794
TID=OsAffx.14892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3074010/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30700Os.8480.1.S1_at11/115+17698739..17700669expressed protein
LOC_Os05g30710Os.52883.1.S1_at11/115+17702381..17704833pentatricopeptide, putative, expressed
LOC_Os05g30720OsAffx.25435.1.S1_at2/115+17707057..17710121transposon protein, putative, unclassified
LOC_Os05g30730Os.53022.1.S1_at11/115+17712555..17713985expressed protein
LOC_Os05g30740OsAffx.14892.1.S1_at10/115+17721901..17722776C2 domain containing protein, expressed
LOC_Os05g30750Os.14652.1.S1_at11/115+17730985..17735251C2 domain-containing protein, putative, expressed
LOC_Os05g30760Os.55829.1.S1_at11/115+17740235..17746288hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14892.1.S1_at--358--6151NONE
GAGGTGTTCTTCCGCTCCAGGACAT
NONE
OsAffx.14892.1.S1_at--751--9931Chr05:17722392..17722416 (25 bp)
TACCCGGTCCGCAAGGTCGGCTCGA
LOC_Os05g30740
OsAffx.14892.1.S1_at--1124--2891Chr05:17722380..17722404 (25 bp)
AAGGTCGGCTCGAGCAGGACCACCC
LOC_Os05g30740
OsAffx.14892.1.S1_at--668--2631Chr05:17722344..17722368 (25 bp)
AACCTCTCCTACAAGCTCGGCGGCG
LOC_Os05g30740
OsAffx.14892.1.S1_at--1127--4471Chr05:17722097..17722121 (25 bp)
GCCGGTGAAGCAGCCACGGGCAAAA
LOC_Os05g30740
OsAffx.14892.1.S1_at--1050--2291Chr05:17722074..17722098 (25 bp)
AAATGGAGTCTTGCAGAATATGAAT
LOC_Os05g30740
OsAffx.14892.1.S1_at--80--631Chr05:17722051..17722075 (25 bp)
ATGCTAAACTATATTCTGTCTTAAA
LOC_Os05g30740
OsAffx.14892.1.S1_at--704--7351Chr05:17722011..17722035 (25 bp)
GTGAACATATATGCGAATGAATCTG
LOC_Os05g30740
OsAffx.14892.1.S1_at--623--5251Chr05:17721993..17722017 (25 bp)
GAATCTGATCATCTGAAGGCGAGCA
LOC_Os05g30740
OsAffx.14892.1.S1_at--807--5391Chr05:17721946..17721970 (25 bp)
GAAGCTTGCAAATCGCAATGGTGTT
LOC_Os05g30740
OsAffx.14892.1.S1_at--413--2231Chr05:17721937..17721961 (25 bp)
AAATCGCAATGGTGTTTAGCTGTTT
LOC_Os05g30740
Target Sequence 
GAGGTGTTCTTCCGCTCCAGGACATCTCGCCGGCTCCGGGACGGCCCACCGCCGGCGCGGTGGCGTTCTACCCGGTCCGC
AAGGTCGGCTCGAGCAGGACCACCCACGGCGTGCTCAACCTCTCCTACAAGCTCGGCGGCGTCGTCCACCTTGACCCCGC
CGCGGCCGCCGCCGCCGCCTGCAGCTGCAAGCCCGCCGCGCCGGCAGCAGGTGGCTCGACGATGGCGTACCTGGCGGCGG
CAGCGGCGGCGTACAGGGTGCGCCGCCGCCGCAGCCGCCGCTGTACGGCTACCGCCAGCTGCCGCCGATACCGCAGCCGG
TGCCGCCTATGGGCGCGGTGGAGGGCGGCGGCGTGCGCGCCGGCCGGTGAAGCAGCCACGGGCAAAAATGGAGTCTTGCA
GAATATGAATGCTAAACTATATTCTGTCTTAAATAAATATATAAATATGTGAACATATATGCGAATGAATCTGATCATCT
GAAGGCGAGCAAAAAAAGTAAAATTATGAAATTGAAGCTTGCAAATCGCAATGGTGTTTAGCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis