Browse Element(s) Details


OsAffx.14902.1.S1_at

Description tigr:9633.m02884
TID=OsAffx.14902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3158011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31560NANA5+18281364..18281823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31570Os.50205.2.S1_at10/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31570Os.50205.1.S1_x_at5/115+18295956..18301673NB-ARC domain containing protein, expressed
LOC_Os05g31580OsAffx.14902.1.S1_at11/115+18304654..18305241hypothetical protein
LOC_Os05g31590OsAffx.27107.1.S1_at10/115+18309141..18310349hypothetical protein
LOC_Os05g31600Os.54849.1.S1_at11/115+18310739..18314902retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g31610OsAffx.14903.1.S1_at11/115+18315706..18320034Leucine Rich Repeat family protein, expressed
LOC_Os05g31620Os.10058.1.S1_at10/115+18325341..18326315EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14902.1.S1_at--368--2791Chr05:18305180..18305204 (25 bp)
AAGAGGTTGTCGATGGAGATCCACA
LOC_Os05g31580
OsAffx.14902.1.S1_at--935--6031Chr05:18305165..18305189 (25 bp)
GAGATCCACAAGTCCCAAGCCGATT
LOC_Os05g31580
OsAffx.14902.1.S1_at--336--3251Chr05:18305150..18305174 (25 bp)
CAAGCCGATTGATCGGGCTCCATGG
LOC_Os05g31580
OsAffx.14902.1.S1_at--90--2151Chr05:18305102..18305126 (25 bp)
ACAGAGCCGAAGAGCCAGCTGCGGA
LOC_Os05g31580
OsAffx.14902.1.S1_at--527--8015Chr05:29593738..29593761 (24 bp)
GGAGGCAGCAATCGGCCTGTTCCCA
NONE
OsAffx.14902.1.S1_at--705--6391Chr05:18305017..18305041 (25 bp)
GATCGAGGAGACCAAATTTCCCACA
LOC_Os05g31580
OsAffx.14902.1.S1_at--414--2256Chr05:29593814..29593837 (24 bp)
AAATTTCCCACACATCGAGCGGAAG
NONE
OsAffx.14902.1.S1_at--415--2956Chr05:29593838..29593862 (25 bp)
AAGGCCTTCCACTTGTTGTAGTTGG
NONE
OsAffx.14902.1.S1_at--34--10872Chr06:11790853..11790873 (21 bp)
TTGGAACATGGGACTTGACGGCGAC
NONE
OsAffx.14902.1.S1_at--111--1151Chr05:18304908..18304932 (25 bp)
AGTCGCATACGGGTTGATGAACACC
LOC_Os05g31580
OsAffx.14902.1.S1_at--324--951Chr05:18304747..18304771 (25 bp)
AGGAAGCGGCGCTAGAGCAGTACTA
LOC_Os05g31580
Target Sequence 
AAGAGGTTGTCGATGGAGATCCACAAGTCCCAAGCCGATTGATCGGGCTCCATGGCGAGGTCGAGGACGTCGTCGGCGAC
AGAGCCGAAGAGCCAGCTGCGGAGGCAGCAATCGGCCTGTTCCCAGGCAGCGTCGGGGTTGGCGGGAGGAGCAGCGTCAA
GATGATCGAGGAGACCAAATTTCCCACACATCGAGCGGAAGAAGGCCTTCCACTTGTTGTAGTTGGGGTTACGAAGCTCG
AGAGAGATTGGAACATGGGACTTGACGGCGACAGTCGCATACGGGTTGATGAACACCGGGGCGACGGTAGAGGTGGAAGA
CGACGCCGTAGAGGAGTCGGTGGCAGCGGAGGTAGCCGAGGAAGTGGACATGGTGAGGGAGGAGGGGCGCAGCAGCCAGG
GAGGCGGCAGCGCTCGGTGGACGCAGCGACCAGAGGAAGCGGCGCTAGAGCAGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis