Browse Element(s) Details


OsAffx.14917.1.S1_at

Description tigr:9633.m02972
TID=OsAffx.14917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3245010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32420NANA5+18836176..18837358expressed protein
LOC_Os05g32430Os.11735.1.S1_at11/115+18845063..18850153phosphatase, putative, expressed
LOC_Os05g32440OsAffx.27119.1.S1_at11/115+18858318..18859736expressed protein
LOC_Os05g32450OsAffx.14917.1.S1_at10/115+18860547..18863614hypothetical protein
LOC_Os05g32460OsAffx.23856.2.S1_at11/115+18875744..18877004VQ motif family protein
LOC_Os05g32470Os.54691.1.S1_x_at3/115+18880590..18884566hypothetical protein
LOC_Os05g32470OsAffx.10222.1.S1_x_at2/115+18880590..18884566hypothetical protein
LOC_Os05g32480OsAffx.7680.1.S1_at6/115+18887197..18893017transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14917.1.S1_at--171--7831Chr05:18860618..18860642 (25 bp)
GGTTTGGTACGTTTTGACTACAGCG
LOC_Os05g32450
OsAffx.14917.1.S1_at--863--2011Chr05:18860634..18860658 (25 bp)
ACTACAGCGTTTAGTATCCTTCCTG
LOC_Os05g32450
OsAffx.14917.1.S1_at--687--571Chr05:18860649..18860673 (25 bp)
ATCCTTCCTGCATCTATTCTTCGTG
LOC_Os05g32450
OsAffx.14917.1.S1_at--958--2971NONE
AATGTCCACTTCAGGCAACGAGCAA
NONE
OsAffx.14917.1.S1_at--130--7931Chr05:18862230..18862254 (25 bp)
GGATTTGGGTCTTCAATTGGCATTA
LOC_Os05g32450
OsAffx.14917.1.S1_at--272--31Chr05:18862245..18862265 (21 bp)
ATTGGCATTATAACTCATGAGCTGT
LOC_Os05g32450
OsAffx.14917.1.S1_at--273--613Chr05:18863083..18863205 (25 bp)
ATGCCCATGTTTCCAACGGCGCTGC
LOC_Os05g32450
OsAffx.14917.1.S1_at--632--3214Chr05:18863254..18863278 (25 bp)
CAAGGACCAAGCTTTTTGGAGATGT
LOC_Os05g32450
OsAffx.14917.1.S1_at--220--4391Chr05:18863283..18863307 (25 bp)
CCAAGTAGATTGGTTGTTCAGTCAA
LOC_Os05g32450
OsAffx.14917.1.S1_at--209--8212Chr05:18863414..18863438 (25 bp)
GGAATGTACACTGCCGACCAAATGA
LOC_Os05g32450
OsAffx.14917.1.S1_at--657--1491Chr05:18863453..18863477 (25 bp)
AGCACGCTGTCCTACGGAGAACCAT
LOC_Os05g32450
Target Sequence 
GGTTTGGTACGTTTTGACTACAGCGTTTAGTATCCTTCCTGCATCTATTCTTCGTGGGGAAAAAAATGTCCACTTCAGGC
AACGAGCAAAGGGTGGATTTGGGTCTTCAATTGGCATTATAACTCATGAGCTGTACCTCAAGATAACATGCCCATGTTTC
CAACGGCGCTGCACCTGTAGGGGGATGTACCAAATGTCCATAAATGAAAACGTACAACCACAAGGACCAAGCTTTTTGGA
GATGTTAGGCCAAGTAGATTGGTTGTTCAGTCAACCACCTATCATGCAACCACAAATAACAGGAATGTACACTGCCGACC
AAATGATGGGATATGCCGGCAGCACGCTGTCCTACGGAGAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis