Browse Element(s) Details


OsAffx.14941.4.S1_at

Description tigr:9636.m02717
TID=OsAffx.14941.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2749011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27440OsAffx.17189.1.S1_at11/118+16616850..16618716hypothetical protein
LOC_Os08g27450Os.27037.1.A1_at1/118+16621544..16624867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27460NANA8+16625031..16633162transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27470NANA8+16634211..16634522hypothetical protein
LOC_Os08g27480OsAffx.14941.1.S1_at11/118+16641694..16642639hypothetical protein
LOC_Os08g27480OsAffx.14941.1.S1_s_at8/118+16641694..16642639hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_s_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.25952.1.S1_s_at1/118+16643638..16647767hypothetical protein
LOC_Os08g27500NANA8+16650539..16652968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g27520NANA8+16658309..16659979retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27530OsAffx.17191.1.S1_at11/118+16660405..16663927hypothetical protein
LOC_Os08g27540Os.54366.1.S1_at11/118+16664745..16668048expressed protein
LOC_Os08g27550NANA8+16668802..16669157hypothetical protein
LOC_Os08g27560OsAffx.5952.1.S1_at2/118+16670594..16671058hypothetical protein
LOC_Os08g27570OsAffx.278.1.S1_at1/118+16672003..16676015retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14941.4.S1_at--1147--2932Chr09:15695535..15695559 (25 bp)
AAGGCTTTCGCCAACATCTTCACAT
NONE
OsAffx.14941.4.S1_at--192--8312Chr09:15695533..15695557 (25 bp)
GGCTTTCGCCAACATCTTCACATCA
NONE
OsAffx.14941.4.S1_at--17--432Chr12:13177714..13177737 (24 bp)
ATCTTCACATCACGCACACAAGCAC
NONE
OsAffx.14941.4.S1_at--773--3511Chr08:16647248..16647272 (25 bp)
CATCAACGACCACGGAAAAGTCCAT
LOC_Os08g27490
OsAffx.14941.4.S1_at--937--5811Chr08:16647241..16647265 (25 bp)
GACCACGGAAAAGTCCATGACGTCT
LOC_Os08g27490
OsAffx.14941.4.S1_at--166--8151Chr08:16647235..16647259 (25 bp)
GGAAAAGTCCATGACGTCTTACAAG
LOC_Os08g27490
OsAffx.14941.4.S1_at--107--2851Chr08:16647231..16647255 (25 bp)
AAGTCCATGACGTCTTACAAGCAGT
LOC_Os08g27490
OsAffx.14941.4.S1_at--407--10491Chr08:16647217..16647241 (25 bp)
TTACAAGCAGTCATACCTCGACGCA
LOC_Os08g27490
OsAffx.14941.4.S1_at--1005--2212Chr12:4042461..4042481 (21 bp)
ACAAGCAGTCATACCTCGACGCAAC
NONE
OsAffx.14941.4.S1_at--704--5012Chr12:4042451..4042477 (23 bp)
GCAGTCATACCTCGACGCAACCAAA
NONE
OsAffx.14941.4.S1_at--1144--5772Chr12:13177797..13177816 (20 bp)
GACGCAACCAAACACGCCAACGCAT
NONE
Target Sequence 
AAGGCTTTCGCCAACATCTTCACATCACGCACACAAGCACCCCACATCAACGACCACGGAAAAGTCCATGACGTCTTACA
AGCAGTCATACCTCGACGCAACCAAACACGCCAACGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14941.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis